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Name : CDSE_0188 (CDSE_0188) Accession : YP_007459723.1 Strain : Candidatus Kinetoplastibacterium desouzaii TCC079E Genome accession: NC_020294 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 816427 - 820536 bp Length : 4110 bp Strand : - Note : Transcription; SecretomeP prediction: 0.07. DNA sequence : ATGCCTTATTCGTATACCGAAAAAAAGCGCATTCGTAAAAGTTTTGCCAAGCGTGAAGACGTACAAAAAATTCCATGTTT ATTGGAAATGCAATTGCAATCTTATCAGACTTTTTTGCAAGCTGACAAGGATCCATTAAAACGTTCGGTAGATGGTTTGC AGGCCGCTTTTTTATCAATCTTTCCAATAGTTAGTCATAATCAATTTGCTAGATTAGAGTTTGTTAGCTATGAACTTGGT GAGCCAGTTTTTGATGTTAAAGAATGTCAACAACGAGGTTTGACTTATGCTTCTCCTCTGCGTGCTAAATTGCGTTTGGT TCTAATGGATAGGGAGTCCAGTAAGCCTATTATTAGAGAAGTGAAAGAGCAAGAAGTTTATATGGGAGAAATTCCACTTA TGACATCTTCTGGTTCCTTCGTTGTTAATGGAACAGAAAGAGTCGTTGTGTCTCAATTGCATAGATCTCCTGGTGTGTTC TTTGAGCATGACAGAGGGAAAACTCATAGTTCAGGAAAATTATTATTTTCTGCAAGAATTATCCCTTATAGAGGGTCTTG GTTAGATTTTGAATTTGATCCAAAAGATATATTATTCTTTCGTATAGATCGTCGACGTAAAATGCCAGTGACTATTCTAT TGAAATCTATTGGTTTTTCTCCTGAGTCTATTCTTTCATATTTTTTTGATTCTGATGTTTTTATTTTAAATAAAACAGAT GCTGTTTTAGAATTTGTTCCAGAAAGATGGAAAGGAGAGATAGTTAATTTTGATCTTATTGATCAGAATGGAGTGGTTTT AGTAGAGAAAGACAAGCGTATAAATACTAAACATTTAAGAGAGATATCAAAGCAAGGTATTGAGAAAATATTGGTAAAAG ATGAGTTTTTAATTGGAAGAACTTTATCTGAAAATATAATTGATCCTGAAACAGGAGAGATTATTGCTAATGCTAATGAT GAGTTGACAGATCAAATATTAGACATTTTAAGAAAACATAATATTGTTCAAGTTAAAACTTTATATACTAATGATTTAAA TAAAGGTTCTTATATTTCTCAGACATTACGTGTTGATGAGACCATCGATCAAATGTCAGCTAAGATTGCCATTTATCGTA TGATGAGACCAGGAGAACCACCAACTGAAGAAGCAGTTAATGGTCTTTTTGAACGTTTATTTTTTAATGAAATCTCATAT GATTTATCTCGTGTTGGTCGTATGAAGTTAAATAGTCGTCTTGGTCTTGGTAATGATGCAGATACAATGACTTTAACGAA AGAAGATATCTTAGAATCAATAAAAGTTTTAGTTGATTTGCGTAATGGCCAAGGTCAAATTGATGATATTGACCATCTAG GTAACAGAAGAGTGAGATGTGTTGGTGAATTAACTGAAAATCAATTTAGATCAGGTCTAGTTAGGGTTGAAAGAGCAGTT AGAGAAAGATTAGGGCAGGCAGAAACAGAAAACTTAATGCCTCATGATTTGATTAACTCAAAACCTATTTCTGCTTCTAT TAAAGAATTTTTTGGTTCTAGTCAGTTATCTCAGTTTATGGATCAAACAAATCCTTTGTCTGAGATTACTCATAAACGAC GTGTGTCTGCATTAGGTCCTGGTGGATTAACAAGAGAGCGTGCTGGTTTTGAAGTTAGAGACGTTCATCCTACTCATTAC GGTAGGGTTTGTCCTATAGAGACTCCAGAAGGACCAAATATAGGTCTTATAAACTCGATGTCTTTATATGCAAGATTAAA TGGTTATGGTTTCTTGGAAACGCCATATCGTAAAGTTATAGAAGGTTGTGTTACAGATCAAATAGATTATCTCTCTGCAA TAGAAGAAAGTAAATATGTTATAGCTCAAGCTAATGCTGAATTAGATGATAATAATTGTTTTATTGATGATTTAATAGCA TGTAGAGAATCAGGAGAAACTCTTCTTACATCTCCTAAAAATGTTCATTATATTGACGTAGCTCCATCGCAAATAGTTTC CGTAGCTGCTTCTTTAATACCATTTTTAGAACATGATGATGCAAATAGAGCTTTGATGGGTGCTAATATGCAAAGGCAGG CAGTACCATGTTTAATACCTGAAAAGCCAATTGTAGGTACAGGTCTTGAGCGTATTGTTGCTGTTGATTCAGGAACTACT GTTCAAGCTTTAAGAGGTGGAGTTGTTGATTATGTTGATGCTGATCGTATAGTTATTAGAGTAAATGACTCTGAGAATAA TGAAGGTGAAGTTGGTGTTGATATATATAATCTTAATAAATATACCAGATCAAATCAGAATACTAATATCAATCAAAGAC CAATAGTAAAATTAGGAGATCGTATTTCTAATGGAGACGTTCTTGCTGACGGGGCTTCTACTGACTTAGGGGAATTAGCT TTAGGTCAAAATATGCTGGTTGCTTTTATGCCTTGGAATGGTTACAACTTTGAGGATTCTATATTAATTTCTGAAAAAGT TGTTTCCGATGATAGATATACGTCAGTTCATATTGAAGAGTTAACAGTTGTTTCTAGAGACACAAAACTAGGACCTGAAG AAATAACAAGGGATATTAGTAATCTTTCAGAAACACAACTTAATCGCTTAGATGATTCTGGAATTACATACATTGGAGCA GAGGTTGTTGCTGGTGATGTGCTTGTTGGGAAAATAACACCTAAAGGTGAAACTCAACTTACTCCTGAAGAGAAGCTTCT AAGGGCTATTTTTGGAGAAAAAGCATCTGATGTTAAAGATACTTCTTTACGTGTTCCATCAGGAATGAGTGGAACGGTAA TAGATGTTCAGTTATTTACTAGGGAAGGAGTTGTTCGTGATAAGAGAGCTCAGTCAATAATAGATTATGAACTTCGTAAA TATCGTCAGGATTTGAATGATCAGTTGCGTATTGTTGAGAAAGATCAATTTGACAGATTGGAAAAAATATTAATTGGTAA AGTTGTCAATGGTGGTCCTGTTGGTTTATCTAAGGGATCTATTATTACTAAAGAGTATTTGAAAGAGTTGGATAGATGGC ATTGGTTTGATATTCGTTTAACAGAAAACAAATATGCTATTTTATTGGAACAAATAAAAGATTCTTTAGAGCTTAAAAGG CAACAATTTGATGCTTATTTTGAAGAAAAGCGTAAAAAGTTAACTCAAGGTGATGAATTACCACCTGGGGTTATGAAAAT GGTTAAAGTCTATTTGGCAGTTAAAAGAAGGTTACAGCCAGGAGATAAAATGGCTGGTAGACACGGAAATAAAGGTGTTG TTTCTAGAATTGTTCCTATAGAAGATATGCCACATATGGCAGATGGTACTCCTGTGGATATTGTTCTTAATCCTTTGGGG GTTCCTTCTAGGATGAATATTGGGCAAGTATTAGAGGTTCATTTGGGATGGGCTGCTAAAGGAATTGGTCAGAGAATTAG TGATTTAATATCTTTGGATGAGAGTAATCAAGCTAGAGAACTTCGTTCTTATATGAATAAAGTGTATAACTGTGGTGGAG TTTCTGTCGATATTCAGAGTTTAACTGATCGAGAAATTTTAGAGTTGGCTCATAACTTAAGAAATGGATTGCCAGTAGCT ACCCCAGTGTTTGATGGTATCAATGAGGAAGAAATTGCCAAGTTATTATCTCTAGCTTATCCTGATGATGTTGCAGAAAA AATTAAATTAACCCCTTCTCGTTTTCAAGCTTGGTTGTTTGACGGTAGAACTGGGGATAAATTTGAGAGACCAGTAACTA TAGGTTATATGCATTATTTGAAATTACATCATTTGGTTGATGATAAAATGCATGCCAGGTCAACTGGACCTTACTCTCTG GTTACTCAGCAACCTCTTGGAGGTAGGGCTCAATTTGGTGGTCAGCGTTTTGGGGAAATGGAAGTGTGGGCTTTAGAAGC TTATGGTGCTGCTTATACTTTGCAGGAAATGCTTACTGTTAAATCTGATGATATTGTTGGAAGAACTAAGATATATGAAA GCATTGTTAAAGGAGATCATTTAATAAATGCTGGAATGCCAGAATCTTTTAATGTGTTGGTAAAAGAAATTCGTTCTTTA GGTTTAGATATAGATTTGGAGCGTAATTAA Protein sequence : MPYSYTEKKRIRKSFAKREDVQKIPCLLEMQLQSYQTFLQADKDPLKRSVDGLQAAFLSIFPIVSHNQFARLEFVSYELG EPVFDVKECQQRGLTYASPLRAKLRLVLMDRESSKPIIREVKEQEVYMGEIPLMTSSGSFVVNGTERVVVSQLHRSPGVF FEHDRGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKSIGFSPESILSYFFDSDVFILNKTD AVLEFVPERWKGEIVNFDLIDQNGVVLVEKDKRINTKHLREISKQGIEKILVKDEFLIGRTLSENIIDPETGEIIANAND ELTDQILDILRKHNIVQVKTLYTNDLNKGSYISQTLRVDETIDQMSAKIAIYRMMRPGEPPTEEAVNGLFERLFFNEISY DLSRVGRMKLNSRLGLGNDADTMTLTKEDILESIKVLVDLRNGQGQIDDIDHLGNRRVRCVGELTENQFRSGLVRVERAV RERLGQAETENLMPHDLINSKPISASIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSMSLYARLNGYGFLETPYRKVIEGCVTDQIDYLSAIEESKYVIAQANAELDDNNCFIDDLIA CRESGETLLTSPKNVHYIDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLIPEKPIVGTGLERIVAVDSGTT VQALRGGVVDYVDADRIVIRVNDSENNEGEVGVDIYNLNKYTRSNQNTNINQRPIVKLGDRISNGDVLADGASTDLGELA LGQNMLVAFMPWNGYNFEDSILISEKVVSDDRYTSVHIEELTVVSRDTKLGPEEITRDISNLSETQLNRLDDSGITYIGA EVVAGDVLVGKITPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQLFTREGVVRDKRAQSIIDYELRK YRQDLNDQLRIVEKDQFDRLEKILIGKVVNGGPVGLSKGSIITKEYLKELDRWHWFDIRLTENKYAILLEQIKDSLELKR QQFDAYFEEKRKKLTQGDELPPGVMKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRIVPIEDMPHMADGTPVDIVLNPLG VPSRMNIGQVLEVHLGWAAKGIGQRISDLISLDESNQARELRSYMNKVYNCGGVSVDIQSLTDREILELAHNLRNGLPVA TPVFDGINEEEIAKLLSLAYPDDVAEKIKLTPSRFQAWLFDGRTGDKFERPVTIGYMHYLKLHHLVDDKMHARSTGPYSL VTQQPLGGRAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDIVGRTKIYESIVKGDHLINAGMPESFNVLVKEIRSL GLDIDLERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 62 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 82 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 72 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 71 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 66 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 65 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 64 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 64 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 64 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 63 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 63 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 62 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 62 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 62 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 62 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 62 |
| CDSE_0188 | YP_007459723.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 46 |
