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Name : UWK_02040 (UWK_02040) Accession : YP_007468237.1 Strain : Desulfocapsa sulfexigens DSM 10523 Genome accession: NC_020304 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 2302088 - 2306194 bp Length : 4107 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGAAAGAGTAAGAAAAAACTTTGCCAAATCTCCATCAATCATGGAACCTCCGCATCTCATCTCCATGCAGCGGATTTC ATATGAAAAATTTTTACAGATTGATGTGGAGCCAAACGAACGAGAGGATTCTGGTTTGCAGGCTATTTTTAAAAATGTCT TTCCTATCAATGATTTTAACGGACATTGTTCTCTTGAATTTGTGAATTATTCGTTTGGTGAACCAAAGTATACAATTAAC GAATGTCAGCAACGAGGTATGACTTATGATATCCCTGTGAAAATCACAGTACGCTTGATTACTTTTGACGTTGATGAAGA AACGGAAGTGCAGACCATTCGGGATATCAAAGAGCAGCAGGTTTTTCTTGGTGCCCTGCCACTTATGACAGGTGATGGTG TTTTTGTGATCAACGGTACTGAACGTGCCATAGTGTCACAGTTACAGAGATCACCAGGACTCTTTTTTACCCATGACAAT GGAAAAAAACACTCCAGTGGTAAGTTACTGTATTCTGCTCGCATTATTCCAGTACGTGGTTCCTGGATTGATCTGGAATA TGACATCAAAGATATTCTCCATGTGCGTATTGACCGGCGTCGTAAATTTCCTGTAACAACTCTTTTAAAGGCGTTGGATT ATGAGAATGAAGTTGGAGAGGAACCACAGTACAGTTCCGAAAAGCTACTTCGTAAGTTTTATCCGACCTTAAAGGTAAAA AGGGAAAAAGACTCATACTATATCGAATTCAACCCTGAAACCGTCCAGGGGCAAAGGCTCGAGTTTGACCTTGTAGATCC CCAAACTGGCGACATTTTAGGAAAAGAAGGCAAAAAACTCGGTAAAGCATTATGCAAACGCCTGGTTAAAGCCAATGTCG AATTTTTACGAATTTCTGAAGAAAATCTCATCGGAAAATTTCTCGTTACCGACTTTGTGAAACCTGAAACCGGTGAACTT CTTGCTGCCTGTAATTCGGAAATTACTGAATCTACGCTTGAACTATTTGCTGAAGCAGGAATCGATGAGTTTGAAATTCT TTATATAGACGGAATTACCTATTCATATGCTTTCAGGAAGACTCTTGCACTCGACAAAGTTGAAAATAGTGACGAAGCTA TACTCGAGATATACAGAAGACTTCGTCCTTCAAGTCCTCCAACAATTGAAGTTGCTCAGACTTTTTTCAACAATCTTTTT TTCAACAAAGATCTTTATGATCTATCTGAAGTCGGACGGTATAAAATAAATGCCCGCCTTGGTCTTGATACGGATATTGA TCATCGAGCACTTACCAAGGAAGACATCATTGAATCTGTTCTCTTCCTTGTCCGACTGAAAGACAGTCAGGGCGATGTTG ATGACATTGATCATCTTGGAAATCGTAGGGTCCGAACGGTTGGTGAACTTGTAGAGAACCAATATCGAATGGGCCTTATC CGAATGGAACGTGCCATCAAGGAACGTATGACTCTACAGGAAATAGAGACCATGATGCCCCATGATCTCGTCAATCCTAA GCCTATTTCTGCAGCAATTAAGGAATTTTTTGGTACATCACAGTTGTCACAGTTTATGGACCAGACGAACCCCTTATCCG AGGTGACCCATAAGCGACGTTTATCTGCATTAGGACCCGGAGGTCTGTCACGTGAACGTGCAGGATTTGAAGTGCGTGAC GTTCATCCAACCCATTATGGTCGTATTTGCCCTGTTGAAACACCGGAGGGACCAAACATCGGTCTGATTGTTTCACTTGC TACCTACGCTCGGGTGAATCCATATGGATTTATTGAGACTCCATACAGAAAAGTTGAAAACTGTATAGTACTTGATGATA TTAAATATTTAAGTGCGTTGCAGGAACAGAAACAGCTAATCGCTCCTGCAGCGATACAACTCGATAAAAACAATAAAATT ATCGAGGAACGGTTGATTGTTCGTGAAGAAGGTGAAGTTATTACAGTCAACGCTGACTTTGTTACCTATATGGATATTGC ACCCAATCAGTTAGTCAGTGTTGCCGCATCACTCATTCCATTTCTTGAGAATGATGATGCTAACCGTGCACTTATGGGGT CGAACATGCAACGCCAGGCAGTACCGCTTATGGTAACTGCTGCACCTCTTGTTGGAACTGGCATGGAACGTTATGTTGCC AGAGATTCCGGGGCTTGTCTGCTTGCGGGTGCTGAGGGTGTGGTTGAAGAAATTGACTCTAATCGAATTGTTATCCGTTA CGATAAGCATGGAATTGACGGTTTTGATACCGGAGTAGGTGTCTATCGTCTTTCTAAATACAAAAAATCGAATCAAAATA CTTGTTTTACTCAGAATCCGTTGGTGCTTCCAGGGCGTCGAGTTAAAAAAGGAACAGTTCTCGCCGATGGACCATCATGT GAACAGGGTGAGCTTGCACTTGGAAAAAATGTAACCATTGCCTTTATGCCATGGCGTGGATTTAATTTTGAGGATTCCAT ACTTGTCAATGAACGGCTCCTGAAAGAAGACACCTTTACTTCTGTGCACATCGAAGTTTTCGAGACAATGGCACGGGATA CCAAGTTGGGTAAAGAAGAGATCACCCGTGATATTCCCAACGTTAGTGAGGAAACACTTCGTAATCTTGACGATTCCGGC ATTGTCCGCATTGGTGCTGATGTCAGGGCAGGAGATACTCTGGTTGGAAAGGTTACCCCGAAGGGTGAATCGATGCTCTC TCCTGAGGAAAAGCTTTTGCGGGCCATATTTGGTGAAAAGGCTCAGGATGTGAAAGATTCATCTCTCCGTGTACCACCTG GAGTTGAGGGCGTCGTAATTGATGCAAAAGTATTTTCGAGAAAAGGCGTTGATAAAGATGAGCGATCCCTTATGATCGAA GATCTAGAGATAGAACGCCTCAATAAAGATAAACTTGATGAACTTGCCAGTTTGAAAAAAGGTGTATGCCGTGAGCTTGG CGAAATCATGGATGGACGAACCGTTAAACAGGATGTCTGTGCTAAAGATGGTACCGTAATAATTAAACTTGGAAAGAAAA TGGAAGCTGCACTGGCGACGCAGATCGGGTTTGCCCAGCTTGCAAAAATTGATTTTTCTGAAAAGTCAAAATTTGAGGCT GAAATTGAGGCGGCTTACGAGCGATATAATAAACAAAAATCATTAATCGCTGAACGCTATGACGGTATCATTGGACGTAT GAAAAAGGGAGATGATCTGCCTCCTGGTGTTGTCAAGATGGTTAAGGTCTATGTCGCCACCAAACGGAAGCTTTCAGTTG GTGATAAAATGGCCGGACGTCATGGAAATAAAGGTGTCGTATCAAGACTTCTTCCAGAAGAAGATATGCCTTTCTTTGCA GATGGAACCACCGTTGATATCGTTTTGAATCCACTGGGTGTGCCGTCTCGTATGAATGTTGGGCAGGTACTGGAAGTTCA TTTAGGTTTTGCTGCTAAAAGGATCGGTAAACAGCTTTCCGATCTCGCTCAAGCTGAAGAACTCGACGCTATCAAAACCA AGATGAAGGCCGTTTATTCTAAAGAAGAATATAAGGCAATCACTGATGGTATGACCGATGCTGAGCTCTTTGACTGGTGT CGTAAACATTATCGTGGTATCCACGTTGCTACTCCGGTCTTTGATGGTGCTCCTGAAGAACAGATTCGAAAACTGCTTGT TGAAGCAGGTGTGGATGAAGTTGGACAGAGTCAACTGTACGATGGGCTTACCGGTGATCCATTTGACAATCTGGTGACAG TTGGTGTCATGTATATGCTGAAACTGCATCATCTTGTTGACAATAAAATTCATGCTCGTTCCACCGGACCTTACTCTCTT GTTACCCAGCAACCTTTGGGTGGTAAGGCACAGTTTGGTGGGCAGCGACTTGGTGAGATGGAGGTATGGGCAATGGAGGC ATACGGTGCCGCCTATACCTTGAAAGAATTTTTAACGGCCAAGTCTGATGATGTTGAAGGACGTACAACCATGTACGAAC GTATTGTCAAGGGTAACAATTTCCTTACAACAGGCCTTCCTGAATCTTTCCATGTGCTTGTGAAAGAACTTCAGGGACTC TGTTTAGATATGGAACTTCTTGAATAA Protein sequence : MERVRKNFAKSPSIMEPPHLISMQRISYEKFLQIDVEPNEREDSGLQAIFKNVFPINDFNGHCSLEFVNYSFGEPKYTIN ECQQRGMTYDIPVKITVRLITFDVDEETEVQTIRDIKEQQVFLGALPLMTGDGVFVINGTERAIVSQLQRSPGLFFTHDN GKKHSSGKLLYSARIIPVRGSWIDLEYDIKDILHVRIDRRRKFPVTTLLKALDYENEVGEEPQYSSEKLLRKFYPTLKVK REKDSYYIEFNPETVQGQRLEFDLVDPQTGDILGKEGKKLGKALCKRLVKANVEFLRISEENLIGKFLVTDFVKPETGEL LAACNSEITESTLELFAEAGIDEFEILYIDGITYSYAFRKTLALDKVENSDEAILEIYRRLRPSSPPTIEVAQTFFNNLF FNKDLYDLSEVGRYKINARLGLDTDIDHRALTKEDIIESVLFLVRLKDSQGDVDDIDHLGNRRVRTVGELVENQYRMGLI RMERAIKERMTLQEIETMMPHDLVNPKPISAAIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLSRERAGFEVRD VHPTHYGRICPVETPEGPNIGLIVSLATYARVNPYGFIETPYRKVENCIVLDDIKYLSALQEQKQLIAPAAIQLDKNNKI IEERLIVREEGEVITVNADFVTYMDIAPNQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLMVTAAPLVGTGMERYVA RDSGACLLAGAEGVVEEIDSNRIVIRYDKHGIDGFDTGVGVYRLSKYKKSNQNTCFTQNPLVLPGRRVKKGTVLADGPSC EQGELALGKNVTIAFMPWRGFNFEDSILVNERLLKEDTFTSVHIEVFETMARDTKLGKEEITRDIPNVSEETLRNLDDSG IVRIGADVRAGDTLVGKVTPKGESMLSPEEKLLRAIFGEKAQDVKDSSLRVPPGVEGVVIDAKVFSRKGVDKDERSLMIE DLEIERLNKDKLDELASLKKGVCRELGEIMDGRTVKQDVCAKDGTVIIKLGKKMEAALATQIGFAQLAKIDFSEKSKFEA EIEAAYERYNKQKSLIAERYDGIIGRMKKGDDLPPGVVKMVKVYVATKRKLSVGDKMAGRHGNKGVVSRLLPEEDMPFFA DGTTVDIVLNPLGVPSRMNVGQVLEVHLGFAAKRIGKQLSDLAQAEELDAIKTKMKAVYSKEEYKAITDGMTDAELFDWC RKHYRGIHVATPVFDGAPEEQIRKLLVEAGVDEVGQSQLYDGLTGDPFDNLVTVGVMYMLKLHHLVDNKIHARSTGPYSL VTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLKEFLTAKSDDVEGRTTMYERIVKGNNFLTTGLPESFHVLVKELQGL CLDMELLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 53 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 52 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 52 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 52 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 52 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 51 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 51 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 51 |
| UWK_02040 | YP_007468237.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 51 |
