Gene Information

Name : S58_43540 (S58_43540)
Accession : YP_007513926.1
Strain : Bradyrhizobium oligotrophicum S58
Genome accession: NC_020453
Putative virulence/resistance : Virulence
Product : toxin secretion ABC transporter ATP-binding and membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4953212 - 4955338 bp
Length : 2127 bp
Strand : -
Note : -

DNA sequence :
ATGGACGCGGGGCAGAGGGATACGGGGCTTGACTGCCTGACATTGCTGCTGCGGTTCCATCAGGTTGCCGTCGATCCGGC
GCAGATTGCACATCAGCTTGCGGGAGAGCCGGTCGGCGTGACCGAGATGCTTCGCTGCGCCAAGCAGCTGAAGCTGAAGG
CGCGCGCGGTCCGCCAGAGTTGGGGCGGGCTTGCCAAGCTGCCGCTGCCGGCGATCGTGGCGCGGTCGGATGGCACGTTC
GCCATATTGGGCCAGGTCACCGCGGAGGCGGCGTTGATCCAGGACCCGCTGGTCCACCGGCCGCAGAGCCTCAAGCGCGC
CGAGTTCGAATCCAATTGGACCGGCATGGTGGTGCTGATGGCGCGCCGCGCCTCGCTCACCGACCTCGCGCGGCGATTCG
ACATCACCTGGTTCCTGCAGGCGATGCACAAATATCGCCGGCTGCTCGGCGAGGTGCTGCTGGCCTCGTTCTTCCTGCAG
CTGTTCGGCCTGGTTACGCCGCTGTTCTTCCAGGTCGTCACCGACAAGGTGCTGACGCATCGCGGCTACACCACGCTCGA
CGTGCTGGTGTTCGGACTCGTCACCGTCACCATCTTCGAGACCGTACTCGGGGGTCTTCGAACCTACGTCTTCTCCCACA
CCACCAACCGCATCGACGTCGAGCTCGGCGCGCGGCTGTTCCGGCATCTGGTGGCGCTGCCGATCGCCTATTTCGAGGCG
CGGCGGGCGGGCGATTCGGTGGCGCGGGTGCGCGAGCTGGAGAACATCAGGAACTTCATCACCAGCTCGGCGCTGACCCT
GGTGATCGACCTCGCCTTCACCTTCGTCTTCCTCGGGGTGATGTTCTACTATTCGCCGTTCCTCTCCTGGATCGTGGTCG
GCTCGTTTCCGTTCTACATCGCGCTGTCGGCGGGCGTCACCCCGATCTTCAAGAAGCGGCTCGATGTCAAGTTCGATCGC
GGCGCCGAGAACCAGGCCTTCCTGGTCGAGACCGTGACCGCGATCCAGACCTTGAAGGCGATGGCGATCGAGCCGCAGAT
GCAGCGGCGCTGGGAGGAGCAGCTCGCCGGCTATGTCGGCGCCAGCTTCGATGTGCTGTCGCTCGGCAACTGGGCGAGCC
AGTCGGTGCAGTTCATCAGCAAGATCGTCACCGCGCTGACGCTGTATTTCGGCGCGCATCTGGTGATCGCGGGAGACTTG
AGCGTCGGCGAACTGATCGCCTTCAACATGCTGGCCGGGCGGGTGGCGCAGCCGGTGCTGCGGCTGGCGCAGCTGTGGCA
GGATTTTCATCAGGCGCGGCTGTCGGTGGCCCGGCTCGGCGACATTCTCAACACCACGCCGGAGCCGGCCTTCAATCCCG
GCCGCGCGGCGCTGCCGCCGGTGCGCGGCGAGGTGGTGTTCGACCACGTGCATTTCCGCTATCGCGTCGACGGGCCCCTG
GCGCTGCACGATGTCAGCCTGAAGGTGCCGGTAGGCCAAGTGGTCGGCATCGTCGGCCCCTCCGGCTCGGGCAAGTCGAC
GCTGACCAAGCTGATCCAGCGGCTCTACGTGCCGGAGAGTGGCCGCATCCTGATCGACGGCGTCGATCTCACGGTCGCCG
ACGTCACCTGGCTGCGGCGGCAGATCGGCGCGGTGCTGCAGGAGAACGTGCTGTTCAACCGCTCGATCCGCGACAACATC
GCGCTCGCCGATCCCGGCATGGCGATGGAGCAGGTGATCCAGGCGGCCGAGCTCGCCGGCGCCCACGAGTTCATCCTCGG
CCTGCCGGACGGCTACGACACCATGGTCGGCGAGCGCGGCGCCAGCCTCTCCGGCGGCCAGCGCCAGCGCATCGCGATTG
CACGTGCGCTGATCACCAATCCGCGCATTCTCATCTTCGACGAGGCGACCTCGGCGCTCGACTATGAGAGCGAGAACATC
GTCCAGCGCAACATGCGCAAGATCTGCGCCGGGCGCACCGTGTTCATCATCGCGCACCGGCTGTCGGCCGTGCGCAATGC
CGACCGCATCCTCACCATCGAGAACGGCCGCTTGGTCGAGGACGGCACCCATGACGAGCTGATCAAGCGGGCCGGGCGCT
ATGCCAGCTTGCACCAGATCCAGGCGGGGCTCCATGTCGTCGGCTGA

Protein sequence :
MDAGQRDTGLDCLTLLLRFHQVAVDPAQIAHQLAGEPVGVTEMLRCAKQLKLKARAVRQSWGGLAKLPLPAIVARSDGTF
AILGQVTAEAALIQDPLVHRPQSLKRAEFESNWTGMVVLMARRASLTDLARRFDITWFLQAMHKYRRLLGEVLLASFFLQ
LFGLVTPLFFQVVTDKVLTHRGYTTLDVLVFGLVTVTIFETVLGGLRTYVFSHTTNRIDVELGARLFRHLVALPIAYFEA
RRAGDSVARVRELENIRNFITSSALTLVIDLAFTFVFLGVMFYYSPFLSWIVVGSFPFYIALSAGVTPIFKKRLDVKFDR
GAENQAFLVETVTAIQTLKAMAIEPQMQRRWEEQLAGYVGASFDVLSLGNWASQSVQFISKIVTALTLYFGAHLVIAGDL
SVGELIAFNMLAGRVAQPVLRLAQLWQDFHQARLSVARLGDILNTTPEPAFNPGRAALPPVRGEVVFDHVHFRYRVDGPL
ALHDVSLKVPVGQVVGIVGPSGSGKSTLTKLIQRLYVPESGRILIDGVDLTVADVTWLRRQIGAVLQENVLFNRSIRDNI
ALADPGMAMEQVIQAAELAGAHEFILGLPDGYDTMVGERGASLSGGQRQRIAIARALITNPRILIFDEATSALDYESENI
VQRNMRKICAGRTVFIIAHRLSAVRNADRILTIENGRLVEDGTHDELIKRAGRYASLHQIQAGLHVVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 0.0 57
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 0.0 57
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 0.0 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_43540 YP_007513926.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG1501 Protein 0.0 57
S58_43540 YP_007513926.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG0907 Protein 0.0 57
S58_43540 YP_007513926.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG1557 Protein 0.0 57
S58_43540 YP_007513926.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG0841 Protein 5e-178 56
S58_43540 YP_007513926.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG1269 Protein 5e-177 55