|
Name : S58_45480 (S58_45480) Accession : YP_007514120.1 Strain : Bradyrhizobium oligotrophicum S58 Genome accession: NC_020453 Putative virulence/resistance : Unknown Product : RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 5154743 - 5158861 bp Length : 4119 bp Strand : - Note : - DNA sequence : ATGGCGCAGCAGACATTCACCGGTCGCAAACGCGTTCGCAAGTTCTTTGGACACATCAAGGAAGTCGCGGAGATGCCGAA CCTCATCGAGGTTCAAAAGGCGTCCTACGACCAGTTCCTGATGGTGGACGAGCCTACGGGCGGGCGAGCGGACGAGGGCT TGCAGGCGGTGTTCCGCTCGGTGTTCCCGATCTCCGATTTCTCCGGCACCTCGATGCTGGAATTCGTCCGCTACGAGTTC GAGCCGCCGAAATACGACGTCGACGAGTGCCGCCAGCGCGGCATGACCTTCGCTGCGCCGCTCAAGGTGACGCTGCGCCT CATCGTGTTCGATATCGATGAAGAGACCGGCGCCAAGTCGGTCAAGGACATCAAGGAGCAGGACGTGTACATGGGCGACA TCCCGCTCATGACCATGAACGGCACCTTCATCGTCAACGGCACCGAGCGCGTCATCGTCTCGCAGATGCACCGTTCGCCT GGCGTGTTCTTCGACCACGACAAGGGCAAGACCCATTCGTCGGGCAAGCTGCTGTTCGCCGCCCGCGTCATCCCGTATCG CGGCTCCTGGCTCGACATCGAGTTCGACGCCAAGGATATCGTGTTCGCGCGCATCGACCGTCGCCGCAAGCTGCCGGTGA CGTCGCTGATGTTCGCGCTCGGCCTCGACGGCGAGCAGATCCTGTCGACCTTCTACAAGAAGCTGATCTACAAGCGCATC AAGGAAGGCTGGCGCGTTCCGTTCGACGCCAACCGTTTCCGCGGCTATTCGACTGTCAACGACCTGATCGACGCCGACAC CGGCAAGGTCGTGCTCGAGGCCGGCAAGAAGCTCACCGTCCGCGCCGCCCGCCAGCTCCAGGAGAAGGGGCTGAAGGCGC TGCGCATGTCGGACGAGGAGCTGCTCGGCAACTACATCGCCGAGGATCTCGTCAACCCGAAGACCGGCGAGATCTACGCC GAGGCCGGCGACGAGATCACCGACAAGCTGTTCAAGGTGCTGAACGAGCAGGGCTACAAGGACCTGCCGCTGCTCGACAT CGACCACGTCAATGTCGGCCCCTACATCCGCAACACGCTGTCCGCCGACAAGAACATGACGCGCGAGGACGCGCTGTTCG ACATCTACCGCGTGATGCGTCCGGGTGAGCCGCCGACGCTCGATTCGGCGCAGGCGATGTTCCAGTCGCTGTTCTTCGAT GCCGAGCGCTACGACCTCTCGGCGGTCGGCCGCGTCAAGATGAACATGCGCCTCGAGCTCGATGCGCCGGACACCCAGCG TACGCTGCGCAAGGAAGACATCCTGGCGGTGATCAAGACGCTGGTCGACCTGCGCGACGGCAAGGGCGAGATCGACGACA TCGACCATCTCGGCAACCGCCGCGTCCGCTCGGTCGGCGAGCTGATGGAGAACCAGTACCGCATCGGTCTGCTCCGCATG GAGCGCGCCATCAAGGAGCGCATGTCGAGCGTCGACATCGACACCGTGATGCCGCAGGACCTGATCAACGCCAAGCCTGC CGCGGCTGCGGTGCGTGAATTCTTCGGCTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAGATCA CCCACAAGCGCCGCCTGTCGGCGCTTGGACCGGGCGGTCTGACGCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTGCAT CCGACGCATTACGGCCGTATCTGCCCGATCGAGACGCCGGAAGGTCCGAACATCGGCCTGATCAACTCGCTGGCGACGTT CGCCCGCGTCAACAAGTATGGCTTCGTCGAGACGCCGTACCGCAAGGTCAAGGACGGCCGCGTCACCGACGAGGTGGTGT ATCTGTCCGCCATGGAGGAGGGGCGCTACCGCGTCGCGCAGGCCAACGTGCCGCTCGATGCCAAGGGCCGCTTCACCGAG GACCTCGTGGTCTGCCGTCATGCCGGCGAAGTCGTGCCGATGACGCCGGACAAGGTCGACTACATGGACGTGTCGCCGAA GCAGCTGGTTTCGGTCGCCGCGGCGCTGATCCCGTTCCTCGAGAACGACGACGCCAACCGCGCGCTGATGGGCTCGAACA TGCAGCGCCAGGCGGTGCCGCTGGTTCGCGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAAGGCGTCGTGGCCCGTGAC TCGGGCGCTGCGATCGCGGCGCGCCGCTCGGGCGTGATCGACCAGATCGACGCCACCCGCGTCGTCATCCGTGCCACCGA GGATCTCGATCCGACCAAGTCGGGCGTCGATATCTACCGGCTGATGAAGTACCAGCGCTCGAACCAGTCGACCTGCATCA ACCAGCGTCCGCTGGTGAAGGTCGGCGACATCGTCAAGAAGGGCGACATCATCGCTGACGGTCCGTCGACCGATCTCGGC GAGCTCGCGCTCGGCCGCAACGTGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGACTCCATCCTGCTCTC CGAGCGGATCGTGAAGGAGGACGTCTTCACCTCGATCCACATCGAGGAATTCGAGGTGATGGCCCGCGACACCAAGCTGG GTCCGGAGGAAATCACGCGCGACATTCCGAACGTGTCGGAAGAGGCGCTGAAGAACCTCGACGAAGCCGGCATCGTCTAT ATCGGCGCGGAAGTGCGCGCCGGCGACATCCTGGTCGGCAAGATCACGCCGAAGGGCGAGAGCCCGATGACGCCGGAAGA GAAGCTCTTGCGCGCCATCTTCGGCGAGAAGGCCTCCGACGTTCGCGACACGTCTCTTCGTGTTCCGCCCGGTGTGCAGG GCACGATCGTCGAGGTCCGCGTGTTCAACCGTCACGGCGTCGACAAGGACGAGCGTGCGCTGGCGATCGAGCGGGAAGAG ATCGAGCGTCTGGCCAAGGACCGTGACGACGAGCAGGCGATCCTGGACCGCAACGTCTACAGCCGTCTCGCCGACATGCT GGATGGCCGTCAGGGCATCTCGGGGCCGAAGGGCTTCAAGAAGGACACCAAGATCACGCGTGCGGTGCTCGACGAGTATC CGAAGTCGCAGTGGTGGCTGTTCGCCTCGGCCAACGACAAGCTGATGGCCGAGATCGAGGCCATGCGGAAGCAGTACGAC GAGTCGAAGAAGGGGCTGGAACAGCGCTTCCTCGACAAGGTCGAGAAGCTGCAGCGTGGCGACGAGCTGCCGCCGGGCGT GATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACA AGGGCGTCGTCTCCAAGATCGTTCCGATCGAGGACATGCCGTTCCTGGAGGACGGCACCCATGCGGACATCGTGCTGAAC CCGCTGGGCGTGCCCTCGCGCATGAACGTCGGACAGATCCTCGAGACGCATCTCGGTTGGGCCTGCGCCGGCCTCGGCAA GCGTATCGCCCAGACGGTCGACGCCTATCTGTCGAAGCAGGACGTCAAGCCACTGAAGGAGACGCTGAAGCGCATCTATG GCGAGGACGAGACCATCAAGTCGCTCAACGACAACGAGTTGATCGAGCTGGGTCACAATCTGAGCCGCGGTGTGCCGATC GCCACGCCGGTGTTCGACGGTGCCAAGGAGGCCGACATCGAGGAGATGTTGAAGCTCGCCGGGCTCGACGCCTCTGGCCA GTCGACCGTCTATGACGGCCGCACCGGCGATGCGTTCGACCGCAAGGTCACCGTTGGCTACATCTACATGCTGAAGCTGC ACCATCTGGTCGACGACAAGATCCATGCCCGTTCGATTGGTCCGTACTCGCTGGTCACCCAGCAGCCGCTGGGCGGCAAG GCCCAGTTCGGCGGCCAGCGCTTCGGCGAAATGGAGGTGTGGGCCCTCGAAGCCTACGGCGCGGCCTACACGCTGCAGGA GATGCTGACGGTGAAGTCGGACGACGTCGCCGGCCGCACCAAGGTCTACGAGGCGATCGTGCGCGGCGACGACACGTTCG AGGCCGGTATTCCGGAATCGTTCAACGTGCTGGTCAAGGAAATGCGCTCGCTCGGCCTCAACGTCGACCTGCACAACTCC AAGCTCGGACCGGCGCCGACGTCGGAAGCCGCCGAGTAG Protein sequence : MAQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRADEGLQAVFRSVFPISDFSGTSMLEFVRYEF EPPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSP GVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDAKDIVFARIDRRRKLPVTSLMFALGLDGEQILSTFYKKLIYKRI KEGWRVPFDANRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSDEELLGNYIAEDLVNPKTGEIYA EAGDEITDKLFKVLNEQGYKDLPLLDIDHVNVGPYIRNTLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFD AERYDLSAVGRVKMNMRLELDAPDTQRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPYRKVKDGRVTDEVVYLSAMEEGRYRVAQANVPLDAKGRFTE DLVVCRHAGEVVPMTPDKVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD SGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVGDIVKKGDIIADGPSTDLG ELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVY IGAEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIEREE IERLAKDRDDEQAILDRNVYSRLADMLDGRQGISGPKGFKKDTKITRAVLDEYPKSQWWLFASANDKLMAEIEAMRKQYD ESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLN PLGVPSRMNVGQILETHLGWACAGLGKRIAQTVDAYLSKQDVKPLKETLKRIYGEDETIKSLNDNELIELGHNLSRGVPI ATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDAFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNS KLGPAPTSEAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 62 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 60 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 60 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 60 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 60 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 59 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| S58_45480 | YP_007514120.1 | RNA polymerase, beta subunit | CP003583.1.gene2745. | Protein | 0.0 | 50 |
