Gene Information

Name : S58_60130 (S58_60130)
Accession : YP_007515576.1
Strain : Bradyrhizobium oligotrophicum S58
Genome accession: NC_020453
Putative virulence/resistance : Virulence
Product : toxin secretion ABC transporter ATP-binding and membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6815223 - 6817349 bp
Length : 2127 bp
Strand : -
Note : -

DNA sequence :
ATGGACGCGGGGCAGAGGGATACGGGGCTCGACTGCCTGACATTGCTGCTGCGGTTTCATCAGGTCGCTATCGATCCGGC
GCAGATTGCACATCAGCTGGCGGGAGAGCCGGTCGGCGTGACCGAGATGCTTCGCTGCGCCAAGCAGCTGAAGCTGAAAG
CGCGGGCGGTCCAGCAGACGTGGGATGGGCTCGCCAAGCTACCGCTGCCGGCGATCGTGGCGCGGTTGGATGGCTCATTC
GTCATATTAGGACAGGTCACGTTCGAAGCTGCGCTGATCCAGGATCCGCTCGTCCACCGGCCGCAAAGCCTCAAGCGCGC
CGAGTTCGAATCCAATTGGACCGGCATGGTGGTGCTGATGGCGCGCCGCGCCTCGCTCACCGATCTCGCGCGGCGCTTCG
ACATCACCTGGTTCCTGCAGGCGATGCACAAATATCGCCGGCTGCTCGGCGAGGTGCTGCTAGCCTCGTTCTTCCTGCAG
CTGTTCGGCCTGGTGACGCCGCTGTTCTTCCAGGTCGTCACCGACAAGGTGCTGACCCATCGCGGCTACACCACGCTCGA
CGTACTGGTGTTCGGACTCGTCACCGTGACCATCTTCGAGACGGTGCTGGGCGGGCTTCGAACCTACGTCTTCTCGCACA
CCACCAACCGTATCGATGTTGAGCTCGGCGCGCGGCTGTTCCGCCATCTGGTGGCGCTGCCGATCGCCTATTTCGAGGCG
CGGCGGGCCGGTGATTCGGTGGCGCGGGTGCGCGAGCTGGAGAACATCAGGAACTTCATCACCAGCTCGGCGCTGACCCT
GGTCATCGACCTCGCCTTCACCTTCGTGTTTCTGGGCGTGATGTTCTACTACTCGCCGTTCCTCTCCTGGATCGTGGTCG
GCTCGTTCCCGTTCTATATCGCGCTGTCGGCCGGTGTGACGCCGATCTTCAAGAAGCGGCTCGATGTCAAGTTCGATCGC
GGCGCCGAGAACCAGGCGTTCCTGGTCGAGACCGTGACCGCGATCCAGACCTTGAAGGCGATGGCGATCGAGCCGCAGAT
GCAGCGGCGCTGGGAGGAGCAGCTCGCCGGCTATGTCGGCGCCAGCTTCGATGTGCTGTCGCTCGGCAATTGGGCCAGCC
AGTCGGTGCAGTTCATCAGCAAGATCGTCACCGCGCTGACCTTGTATTTCGGCGCGCATCTGGTGATCGCGGGAGACTTG
AGCGTCGGCGAACTGATCGCCTTCAACATGCTGGCCGGGCGCGTGGCGCAGCCGGTGCTGCGGCTGGCGCAGCTGTGGCA
GGATTTTCATCAGGCGCGGCTGTCGGTGGCCCGGCTCGGCGACATTCTCAACACGACGCCGGAGCCCGCCCTCAATCCTG
GTCGTGCGGCGCTGCCGCCGGTACGCGGCGAGGTCGTGTTCGATCACGTCGATTTCCGCTACCGCGTCGATGGTCCGCTG
GCACTGCACGATGTCAGCCTGAAGGTGCCGGTCGGCCAAGTGGTCGGCATCGTCGGCCCCTCCGGCTCCGGCAAGTCGAC
GCTGACCAAGCTGATCCAGCGGCTCTATGTCCCTGAGGGCGGGCGCATCCTGATCGACGGCGTCGATCTCACGGTGGCCG
ACGTCACCTGGCTGCGGCGGCAGATCGGCGCGGTGCTGCAGGAGAACGTGCTGTTCAACCGCTCGATCCGCGACAACATC
GCGCTCGCCGATCCCGGCATGGCGATGGAGCGGGTGATCCAGGCTGCCGAGCTCGCCGGCGCCCATGAGTTCATTCTCGG
CCTGCCAGACGGCTACGACACCATGGTCGGCGAGCGCGGCGCGAGCCTCTCCGGCGGACAGCGCCAGCGCATCGCGATTG
CGCGTGCGCTGGTCACCAATCCGCGCATCCTCATCTTCGACGAGGCCACCTCGGCGCTCGACTATGAGAGCGAGAACATC
GTCCAGCGCAACATGCGCAAGATCTGCGCCGGGCGCACCGTGTTCATCATTGCGCACCGGCTGTCGGCGGTGCGCAATGC
CGACCGCATCCTCACCATCGAGAATGGGCGCCTGGTCGAGGACGGCACCCATGAAGAACTGATCAAGCGTGCCGGGCGCT
ATGCCAGCTTGCACCAGATTCAGGCGGGGCTCCATGTCGTCGGCTGA

Protein sequence :
MDAGQRDTGLDCLTLLLRFHQVAIDPAQIAHQLAGEPVGVTEMLRCAKQLKLKARAVQQTWDGLAKLPLPAIVARLDGSF
VILGQVTFEAALIQDPLVHRPQSLKRAEFESNWTGMVVLMARRASLTDLARRFDITWFLQAMHKYRRLLGEVLLASFFLQ
LFGLVTPLFFQVVTDKVLTHRGYTTLDVLVFGLVTVTIFETVLGGLRTYVFSHTTNRIDVELGARLFRHLVALPIAYFEA
RRAGDSVARVRELENIRNFITSSALTLVIDLAFTFVFLGVMFYYSPFLSWIVVGSFPFYIALSAGVTPIFKKRLDVKFDR
GAENQAFLVETVTAIQTLKAMAIEPQMQRRWEEQLAGYVGASFDVLSLGNWASQSVQFISKIVTALTLYFGAHLVIAGDL
SVGELIAFNMLAGRVAQPVLRLAQLWQDFHQARLSVARLGDILNTTPEPALNPGRAALPPVRGEVVFDHVDFRYRVDGPL
ALHDVSLKVPVGQVVGIVGPSGSGKSTLTKLIQRLYVPEGGRILIDGVDLTVADVTWLRRQIGAVLQENVLFNRSIRDNI
ALADPGMAMERVIQAAELAGAHEFILGLPDGYDTMVGERGASLSGGQRQRIAIARALVTNPRILIFDEATSALDYESENI
VQRNMRKICAGRTVFIIAHRLSAVRNADRILTIENGRLVEDGTHEELIKRAGRYASLHQIQAGLHVVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 0.0 57
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 0.0 57
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 0.0 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_60130 YP_007515576.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG1501 Protein 0.0 57
S58_60130 YP_007515576.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG0907 Protein 0.0 57
S58_60130 YP_007515576.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG1557 Protein 0.0 57
S58_60130 YP_007515576.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG0841 Protein 7e-176 56
S58_60130 YP_007515576.1 toxin secretion ABC transporter ATP-binding and membrane protein VFG1269 Protein 5e-176 54