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Name : rpoB (C427_4855) Accession : YP_007546302.1 Strain : Glaciecola psychrophila 170 Genome accession: NC_020514 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 4691300 - 4695328 bp Length : 4029 bp Strand : - Note : - DNA sequence : ATGGTTTACTCTTATAGCGAAAAGAAACGTATCCGTAAGGATTTTGGCAAACGTCCACAGGTATTGGAAATACCGTATCT ACTTTCAATCCAATTAGATTCTTTTAAAAAGTTTATTGACCTGGATGTAGATGGTCAACATGGACTGGAAGCAGCATTTC GATCAGTTTTCCCAATAAAGAGTTACTCCGGTAACGCTGAGTTGCAGTATGTAAGTTACCGTTTAGGTGCCCCAGTATTT GATGTGAAAGAATGTCAAATTCGTGGTGTTACATTTTCTGCACCACTACGTGTGAAATTGCGTTTAGTGTTGTTCGATAG AGAAGCAGCACCGGGCACAGTAAAAGACATTAAAGAGCAAGAAGTCTACATGGGTGAAATTCCACTCATGACTGATAACG GAACATTTGTTATCAATGGTACTGAGCGTGTCATAGTGTCGCAATTGCACCGTTCACCAGGCGTGTTCTTCGATCACGAC AAAGGGAAAACTCACTCATCAGGTAAAGTGTTGTATAACGCGCGCGTTATTCCTTACCGTGGTTCGTGGTTAGACTTTGA ATTTGACCCTAAAGATAATTTGTTTGTTCGTATAGATAGACGCCGTAAATTACCGGCAACTATTATGCTACGAGCATTAG AAATGCCTACCGAAGAAATACTTGAGTTGTTTTTTGAAACAAACCAAGTACGTATCGACGGTGAAAAGTATTTGTCAGAT ATCGTGCCAGATCGTCTTCGTGGTGAAACTGCGCAGTTCGATATCTTAGATAATAAAGGCAAAGTAGTCGTAGAAACGGG TCGTCGTATTTCGGCACGTCATACACGCGCACTTGAAAAAGCTAAGATCACAGAGCTTGAAGTACCGGCAGAGTATTTAG TAGGTCGTGTATTTGCTCGTGATTATATCAATAAAGAAACAGGTGAAGTCATTGTTAGTGCAAACGACCTGTTGACTTTA GAAAACATTGTTGAGATTACAGAAGCAGGTATCAAAGCATTTGATACGCTTTACATCAATGAACTTGACCACGGTGCTTA TATTTCAGATACATTACGTATTGATGGCTCAAGCAATAAGCTTGAAGCATTAGTTGAAATATATCGCATGATGCGTCCTG GCGAGCCACCGACTAAAGACGCAGCAGAGACTTTGTTCAATAACTTGTTCTTCTCAGAAGACCGTTATGACTTATCTGCT GTTGGACGAATGAAGTTCAATCGTCGTCTAGGTCGAGATATATCGACTGGTAAAGGCGTGTTAGACAAGGCTGATATTGT TGCTGTAATGAAACAGCTTATCACTATCCGTGACGGAAAAGACGAAGTTGATGATATCGATCACTTGGGTAACAGACGTA TACGTTCTGTTGGCGAAATGGCTGAAAATCAATTCCGTGTTGGTCTAGTTCGTGTTGAACGTGCTGTTAAAGAACGTTTG AGCTTGGGCGACCTTGATGCAATCATGCCTCAGGACTTAATCAACGCCAAACCTATATCTGCTGCAGTTAAAGAGTTCTT TGGTTCAAGCCAATTGTCTCAGTTTATGGATCAGAATAATCCTTTATCTGAAGTTACACACAAGCGCCGTATTTCAGCCT TAGGTCCGGGTGGTTTAACCCGTGAACGTGCAGGTTTTGAAGTACGTGATGTACATCCGACACACTATGGTCGAGTTTGC CCAATCGAGACGCCTGAAGGACCAAATATTGGTTTGATAAACTCGCTTGCAAGTTACGCCCGAACTAACGACTACGGTTT CTTAGAAACTCCGTATCGTAAAATAGCTGACGGTGTTGTGACTGACGAAATTGACTATCTATCTGCGATAGAAGAAGGTC AATATGCGATTGCACAAGCAAACGTAGTACTAGATGAAAAAGGTAAGTTGACAGAAGACTTGATCCCTTGTCGTTTCCGT GGTGAAACCACGTTAATGCCGGTTTCTGATATCACTTACATGGATGTGTCACCGCAACAAATTGTATCTGTTGCTGCGAG CATTATCCCATTCCTTGAGCATGATGATGCTAACCGAGCACTAATGGGTGCCAACATGCAACGTCAGGCCGTTCCTACTC TAATAGCTGAGAAGCCTTTAGTCGGAACAGGTATGGAAAAAATTGTAGCTGTGGATTCTGGTGTCACTATCATCGCAAAA CGTGGTGGTTCAGTTTCCTTCGTTGATGCAAGTCGTATTGTTGTTAAGGTTAATGAATCTGAAATGACTGCTGGTGAGGC GGGCATTGATATTTACAACCTAACTAAATATACCCGTTCTAATCAGAACACGTGTATTAACCAAAGGCCAACTTGTAATG TCGGCGAACCGGTTGTAGCTGGAGATGTATTGGCTGATGGTCCGTCTACTGATATGGGTGAACTGGCTTTAGGTCAAAAC ATGCGTATCGCTTTCATGCCTTGGAACGGTTACAACTTTGAAGATTCTATCTTGATCTCTGAGCGTGTAGCAATGGAAGA CAGATTTACTTCTATCCACATTCAAGAATTAAGCTGTATTGCTCGCGACACTAAGCTTGGTCCAGAAGAAATCAGTGCCG ATATTCCAAATGTTGGTGAATCTGCATTGGGTAAACTAGATGAGTCTGGTGTTGTTTATATCGGTGCTGAAGTTAAAGGT GGCGATATTCTTGTAGGTAAGGTGACACCTAAAGGTGAAACTCAGCTAACCCCAGAAGAGAAACTTCTACGAGCTATTTT CGGTGAGAAAGCATCTGACGTTAAAGATACTTCATTACGTGTACCTAATAGTGTACATGGAACAGTCATCGACGTTCAGG TCTTTACGCGTGATGGTGTTGAGAAAGACAAACGCGCACGTGAAATTGAAGATATGCAATTACGCGAAGTGAAAAAAGAC TTATCTGACGAATTTAATATTTTGGCTGACGGTATTTTTGCACGTGCAGGTAACTTGTTAGTTAAGTCTGGTGTTGATCA GGCAAGGCTTGACAACATGCCACGTGATAAGTGGTTTGACTTAACACTTAACGATGACGATTTGCAGTCTGAGCTGGACC AAATTGCTGATCAACATGTTGAGATCAAAGCAGACTTTGATACTAAGTTTGAGGTTAAACGTCGTAAGATCACTCAAGGT GATGACTTGGCACCCGGTGTGCTTAAAATTGTTAAGGTTTACCTTGCAGTTAAACGTCATATTCAGCCTGGTGATAAAAT GGCGGGTCGTCATGGTAACAAAGGTGTTATCTCGACTATCAAACCTGTTGAAGACATGCCTTATGATGAAAACGGCACGC CAGTTGATATCGTTTTGAACCCATTGGGCGTACCTTCTCGTATGAACATCGGTCAGGTACTTGAAACTCACTTAGGTATG GCTGCTAGTGGTATCGGTGTTAAAATTGACCGTATGCTTAAAGAGCATGAAGAGATGGCCAAGCTGCGTAGCTTCTTACA AGAAGTTTATAGCGCAGGTAAATCTCATCAAACTGTTGATTTAAGCACCTTCACTGATGATGAAGTGACACGTTTAGCCG GTAACCTTCGTAAAGGTGTACCTATGGGGACGCCTGTTTTCGACGGTGCAACTGAAGCTGAAATCAAACATATGCTGACC TTGGCAGATATCCCTGAAAGCGGACAAATTACTTTGTTCGATGGTCGTACTGGTCGCGCATTTGAGCGTCCTGTGACTGT AGGTTATATGTACATGTTGAAACTGAACCATTTAGTAGACGATAAAATGCATGCTCGTTCTACTGGTTCATACAGCTTGG TTACACAGCAACCGTTGGGCGGTAAAGCGCAGTTCGGTGGTCAGCGTTTCGGAGAGATGGAAGTATGGGCACTTGAAGCT TACGGTGCTGCTTACACCTTGCAAGAAATGTTAACTGTTAAGTCTGATGATGTGAATGGCCGAACCAAAATGTATAAGAA CATTGTGGATGGTGATCACCGTATGGAACCTGGTATGCCGGAATCCTTCAACGTGTTGTTGAAAGAAATCCGTTCGCTAG GTATCAACATCGAACTAGAAGAGCGTTAA Protein sequence : MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIDLDVDGQHGLEAAFRSVFPIKSYSGNAELQYVSYRLGAPVF DVKECQIRGVTFSAPLRVKLRLVLFDREAAPGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHD KGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIMLRALEMPTEEILELFFETNQVRIDGEKYLSD IVPDRLRGETAQFDILDNKGKVVVETGRRISARHTRALEKAKITELEVPAEYLVGRVFARDYINKETGEVIVSANDLLTL ENIVEITEAGIKAFDTLYINELDHGAYISDTLRIDGSSNKLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSEDRYDLSA VGRMKFNRRLGRDISTGKGVLDKADIVAVMKQLITIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL SLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC PIETPEGPNIGLINSLASYARTNDYGFLETPYRKIADGVVTDEIDYLSAIEEGQYAIAQANVVLDEKGKLTEDLIPCRFR GETTLMPVSDITYMDVSPQQIVSVAASIIPFLEHDDANRALMGANMQRQAVPTLIAEKPLVGTGMEKIVAVDSGVTIIAK RGGSVSFVDASRIVVKVNESEMTAGEAGIDIYNLTKYTRSNQNTCINQRPTCNVGEPVVAGDVLADGPSTDMGELALGQN MRIAFMPWNGYNFEDSILISERVAMEDRFTSIHIQELSCIARDTKLGPEEISADIPNVGESALGKLDESGVVYIGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRAREIEDMQLREVKKD LSDEFNILADGIFARAGNLLVKSGVDQARLDNMPRDKWFDLTLNDDDLQSELDQIADQHVEIKADFDTKFEVKRRKITQG DDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTIKPVEDMPYDENGTPVDIVLNPLGVPSRMNIGQVLETHLGM AASGIGVKIDRMLKEHEEMAKLRSFLQEVYSAGKSHQTVDLSTFTDDEVTRLAGNLRKGVPMGTPVFDGATEAEIKHMLT LADIPESGQITLFDGRTGRAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 80 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 80 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 79 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 79 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 79 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 79 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 72 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 64 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_009782.5559150.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_009487.5169226.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002953.2862188.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002952.2860169.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_007793.3914836.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_003923.1002608.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_013450.8613267.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_009641.5330265.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002758.1120515.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_010079.5776819.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002951.3236234.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_007622.3792928.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_002745.1123305.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_007795.3920377.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_009632.5315067.p0 | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
| rpoB | YP_007546302.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 46 |
