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Name : rpoB (SM2011_c01317) Accession : YP_007574612.1 Strain : Sinorhizobium meliloti 2011 Genome accession: NC_020528 Putative virulence/resistance : Unknown Product : putative DNA-directed RNA polymerase beta chain Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 1464314 - 1468456 bp Length : 4143 bp Strand : + Note : corresponds to SMc01317 DNA sequence : ATGGCTCAGACCCTTTCGTTTAACGGTCGTAGGCGCGTACGCAAGTTTTTTGGTAAAATTCCCGAAGTCGCGGAGATGCC GAACCTCATCGAGGTTCAGAAGGCGTCTTACGACCAGTTCCTCATGGTGGACGAGCCCCAAGGCGGACGGCCGGATGAGG GGCTTCAAGCCGTTTTCAAATCGGTATTTCCGATCAAGGATTTCTCCGGCGCTTCGATGCTCGAGTTCGTTTCCTACGAA TTCGAGGCACCGAAGTTCGACGTCGAGGAGTGCCGTCAGCGCGACCTGACCTATGCGGCGCCGCTCAAGGTGACGCTGCG GCTGATCGTGTTCGATATCGACGAGGACACCGGCGCCAAGTCCATCAAGGATATCAAGGAACAGAACGTCTACATGGGCG ACATGCCGCTCATGACGGACAACGGTACCTTCATCGTCAACGGCACGGAGCGCGTCATCGTCTCGCAGATGCACCGGTCG CCGGGTGTCTTCTTCGACCATGACAAGGGCAAGAGCCACTCGTCCGGCAAGCTGCTCTTCGCCGCGCGCGTGATCCCCTA TCGCGGTTCGTGGCTCGACATCGAGTTCGACGCGAAGGACATCGTCCATGCGCGTATCGACCGCCGCCGCAAGATTCCGG TGACGTCGCTTCTGATGGCGCTCGGAATGGACGGCGAAGAAATCCTCGACACCTTCTACACGAAGTCGCTCTACCAGCGC GACGGCGAGGGCTGGCGCGTGCCGTTCCAGCCGGATGCGCTGAAGGGCCAGAAGACACTGGCAGACATGATCGACGCCGA CACCGGCGAGGTCGTTGTCGAGAGCGGCAAGAAGCTGACGCCGCGCCTGCTCCGGCAGTTGCAGGAAAAGGGCCTGAAGG CGCTCAAGGCGACCGACGACGATCTCTACGGCAACTATCTCGCCGAGGACGTCGTCAACTTCGAGACCGGCGAGATCTAT CTCGAGGCCGGTGACGAGATCGACGAGAAGACGCTTCCGGTCATCCTTTCCGCCGGCTTCGATGAGATCCCGGTGCTCGA CATCGACCACATCAATATCGGCGCCTATATCCGCAACACGCTTTCGGCCGACAAGAACGAGAACCGTCAGGACGCGCTGT TCGATATCTACCGCGTCATGCGTCCGGGTGAGCCGCCGACCATGGATTCGGCCGAAGCCATGTTCAATGCGCTCTTCTTC GATGCCGAGCGCTACGATCTCTCGGCCGTCGGCCGCGTGAAGATGAACATGCGCCTCGATCTGGACGTTCCGGACACGGT TCGCACGCTGCGCAAGGAAGACATCCTGGCCGTGGTCAAGATGCTCGTGGAACTGCGTGACGGCAAGGGCGAGATCGACG ACATCGACAACCTCGGCAACCGCCGCGTCCGCTCGGTCGGCGAGTTGATGGAGAACCAGTACCGTCTGGGTCTCCTGCGT ATGGAACGTGCGATCAAGGAGCGCATGTCCTCGATCGAGATCGACACCGTGATGCCGCAGGACCTGATCAACGCGAAGCC GGCTGCCGCAGCCGTTCGCGAATTCTTCGGTTCCTCGCAGCTCTCGCAGTTCATGGACCAGGTGAACCCGCTTTCGGAAA TCACCCACAAGCGCCGCCTTTCGGCACTGGGTCCGGGCGGTCTGACCCGTGAACGCGCCGGCTTCGAAGTGCGCGACGTG CATCCGACGCATTACGGCCGTATCTGCCCGATCGAAACGCCGGAAGGCCCGAACATCGGTCTGATCAACTCGCTTGCGAC CTTCGCCCGCGTCAACAAGTACGGCTTCATCGAGAGCCCGTACCGCAAGATCGTCGACGGCAAGGTGACGAACGACGTCG TCTATCTGTCGGCGATGGAAGAAGCGAAGTATCACGTTGCACAGGCAAACTCGGTGCTGGATGACGACGGCTCCTTCTCT GAAGAATTCGTCGTTTGCCGCCACGCCGGCGAAGTCATGCTGGCGCCGCGCGACAACATCAACCTGATGGACGTTTCGCC GAAGCAGCTCGTCTCGGTCGCGGCCGCGCTCATTCCGTTCCTCGAGAACGATGACGCCAACCGCGCGCTGATGGGCTCGA ACATGCAGCGTCAGGCCGTGCCGCTGCTGCGTGCGGAAGCGCCCTTCGTCGGCACCGGCATGGAGCCGGTCGTCGCGCGT GACTCCGGTGCTGCGATCGCTGCCCGCCGCGGCGGTATCGTCGACCAGGTGGACGCGACCCGTATCGTTATCCGCGCCAC CGAAGACCTGGATCCGTCCAAGTCGGGCGTCGATATCTACCGCCTGCAGAAATTCCAGCGTTCCAACCAGAACACCTGCG TCAACCAGCGCCCGCTGGTCACCGTCGGTGACGTGATCAACAAGGGCGATATCATCGCGGACGGTCCGTCGACCGACCTC GGCGATCTGGCGCTCGGCCGCAACGCCCTCGTCGCGTTCATGCCCTGGAACGGCTACAACTACGAAGACTCGATCCTGCT CTCCGAGCGGATCGTGCGTGACGACGTCTTCACCTCGATCCACATCGAGGAATTCGAAGTGATGGCGCGCGACACCAAGC TTGGTCCGGAAGAAATCACCCGCGACATTCCGAACGTTTCGGAAGAAGCGCTGAAAAACCTGGACGAAGCCGGTATCGTC TACATCGGCGCCGAAGTTCAGCCGGGCGACATCCTCGTCGGCAAGATCACGCCGAAGGGCGAGAGCCCGATGACGCCGGA AGAAAAGCTTCTGCGCGCCATCTTCGGCGAGAAGGCGTCGGACGTTCGCGACACGTCGATGCGCATGCCCCCGGGCACCT TCGGCACGGTCGTCGAAGTGCGCGTCTTCAACCGCCATGGCGTCGAGAAGGACGAGCGCGCGATGGCGATCGAGCGCGAG GAAATCGAGCGTCTCGCGAAGGACCGCGACGACGAACAGGCGATCCTCGACCGCAACGTCTATGCGCGTCTGGTCGACAT GCTTCGCGGCCACGTCGCCGTTGCCGGTCCGAAGGGCTTCAAGAAGGGCACCGAGCTCTCCAACGTCGTCATCAGTGAAT ATCCCCGCTCGCAGTGGTGGATGTTCGCTATCGAGGACGAGAAGGCGCAGGGCGAGATCGAAGCGCTTCGCGCACAGTAC GACGAATCCAAGTCGCGCCTCGAACAGCGCTTCATGGACAAGGTCGAAAAGGTTCAGCGCGGCGATGAGATGCCTCCGGG CGTCATGAAGATGGTCAAGGTCTTCGTCGCCGTGAAGCGCAAGATCCAGCCGGGTGACAAGATGGCCGGCCGTCACGGCA ACAAGGGTGTCGTGTCGCGGATCGTGCCGATCGAAGACATGCCGTTCCTGGAAGACGGTACGCATGTCGACGTGGTTCTG AACCCGCTCGGCGTGCCGTCGCGCATGAATGTCGGTCAGATCCTCGAGACCCATCTCGGTTGGGCTTGCGCCGGCATGGG CAAGAAGATCGGAGCGATGCTCGATGCATACAAGGCGGGCGCTGATATCCAGCCGCTGCGCGATACCATCGACAGCGTCA TCGGATCTGGCCCGAAGGGCGAGCCGATCAAGCAGTACGACGATGAATCGATCGTCCGGCTTGCCGAGCAGACCCGCCGC GGCGTTTCGATCGCGACACCGGTCTTCGACGGTGCCGTCGAAGCGGACGTCAACGAGATGCTGGAGCAGGCTGGCCTGAA GGTAACCGGTCAGTCGACGCTCTATGACGGCCGTACCGGCGAGACTTTCGACCGTCAGGTGACCGTGGGCTACATCTACA TGCTGAAGCTCAACCACCTGGTCGACGACAAGATCCACGCCCGTTCGATCGGTCCTTACTCGCTCGTTACCCAGCAGCCG CTGGGCGGCAAGGCGCAGTTCGGCGGTCAGCGCTTCGGCGAAATGGAGGTCTGGGCTCTGGAAGCCTATGGTGCCGCCTA CACGCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTGGCCGGCCGCACCAAGGTCTACGAGGCGATTGTCCGCGGCG ACGATACCTTCGAAGCGGGCATTCCGGAGAGCTTCAACGTTCTCGTCAAGGAAATGCGCTCGTTGGGCCTTTCCGTCGAG CTGGAGAACTCCAAGGTCGACGACGTCGGTAGCACGGCGCAGCTGCCGGACGCGGCCGAATAA Protein sequence : MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFKSVFPIKDFSGASMLEFVSYE FEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRS PGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR DGEGWRVPFQPDALKGQKTLADMIDADTGEVVVESGKKLTPRLLRQLQEKGLKALKATDDDLYGNYLAEDVVNFETGEIY LEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRNTLSADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFF DAERYDLSAVGRVKMNMRLDLDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGKVTNDVVYLSAMEEAKYHVAQANSVLDDDGSFS EEFVVCRHAGEVMLAPRDNINLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR DSGAAIAARRGGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGDVINKGDIIADGPSTDL GDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIV YIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE EIERLAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNVVISEYPRSQWWMFAIEDEKAQGEIEALRAQY DESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVL NPLGVPSRMNVGQILETHLGWACAGMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRR GVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLNHLVDDKIHARSIGPYSLVTQQP LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVE LENSKVDDVGSTAQLPDAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| rpoB | YP_007574612.1 | putative DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 57 |
