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Name : A11Q_1917 (A11Q_1917) Accession : YP_007645740.1 Strain : Bdellovibrio exovorus JSS Genome accession: NC_020813 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : - COG ID : - EC number : - Position : 1936935 - 1941110 bp Length : 4176 bp Strand : - Note : COG0085K DNA sequence : ATGAACCAAACTCCGATTACTGCATCTAATCTGAGAATTAGAAAATCGTTCGCAAAAAATAAACAAGTTATTGAAATTCC AAATCTGATCGAATTGCAAAAAAGATCATACGAAGCTTTCTTGCAAAGAGAAACTGATCCAGATCGTCGTGGTGATGAAG GTCTGAATGGTGTTTTTAAATCAGTATTTCCAATCTCTGATTTCAATAACACTTCGTCTTTAGAGTTCGTAAGTTACACT CTTGAGCCAGCTAAGTACGACGTAGACGAGTGCCGTCAACGTGGTATGACTTTCGCTGCTCCGATCAAAGTAACTCTACG TCTTATCGTTTTTGATATTGATGAAGAAACAGAAGCTCGCAGCATCCGCGATGTAAAAGAACAAGAAGTTTATCTGGGTG AAATCCCATTGATGACAGCTAACGGTTCTTTCATCATCAACGGAACTGAGCGTGTTGTTGTTTCTCAATTACACAGATCT CCGGGTGTTTTCTTTGACCACGATGGTGGTAAGAACAACGCTTCTGGTAAATTAATCTACTCTGCACGCGTGATTCCATA CCGTGGTTCTTGGTTAGACGTTGAGTTCGACCAAAAAGACGTTATCCACGTTCGTATCGATCGTCGTCGTAAATTCCCTG TAACAATCTTGTTAAAAGCATTGGGTTACAATGTTGAGCAATTACTTGAGTACTTCTACGATCTAGATGAAATCGTAGTT AAAGGTAAATCTTTATATCGTAAGCTAGATATCGAAAGAATGTCTGGTCAAAGAGCGATTGCTGATATCGTGGATCCAAA ATCAGGCGAGGTTCTGGTTAAAGCGGGTCGTCGTATCACACGTGCTATCGTTAAAAAAGTAAAAGACTTGAACTTAACTG AAGTTGAAGTTCAACCTCAAGATTTAGAAGGCAAAGTATTAGCTAAGCCTTTAATCGATGAGTCAACAGGTGAAATCATT GCAGATGCAAACAATGAATTAACTGTTTCAATTATTAAAAAAGCAGTTTCTGCTGGTATTGAAAACTTCTACTTAATTTT CTTCGATGGTCTAACTGTTGGTCCATTCTTAAGAAATACTTTGTTAGTTGATAAAGTTAACAACAAAGAAGAAGCTTTAA TAGAAATCTACAAACGTCTACGTCCTGGTGAGCCTCCAGTAATGGAAGCGGCTGAAGCTTATTTCAATCGTCTATTCTTC GATGCAGAAGCGTATGACTTATCAGAAGTTGGTCGTATTAAAATCAATCACAAATTCGGTATCTCGATGGAAGAATGTCC TCCGAGCTTCCGCGTTTTAACTCATAAAGATATCTTGTCGACTGTAAGACACTTGATCGATCTGAAAAATGGTCGTGGTG TTGTTGATGATATCGATCACTTAGGTAATCGCCGTGTTCGTTCTGTGGGTGAGCTTTTAGAAAACCAATACCGCGTAGGT TTGGTTCGTATGGAAAGAGCCATCAAAGAGCGTATGTCATTGCAAGACGTAGAAACGATGATGCCACATGACTTAGTTAA CGCTAAGCCAGTGAATGCCGTAGTGAAAGAGTTCTTCGGTTCTTCTCAATTATCTCAGTTCATGGATCAAACAAATCCAT TATCTGAGATCACTCACAAACGTCGTCTATCTGCACTTGGACCCGGAGGTCTGACTCGTGACCGCGCTGGTTTCGAAGTA CGTGACGTACATCCGACGCATTACGGACGTATTTGCCCGATCGAGACTCCAGAGGGACCAAACATCGGTCTTATCGCGTC TTTGTCGACTTATGCTCGTATCAACAGCTATGGTTTCATCGAGACTCCGTACCGCAAAGTTGAAGGTGGACGTGTTTCAT CTGAAATTCACTACATGTCAGCTCTTGAAGAGGGTGGACACTTTATCGCTCAAGCTCCGACTGATGAAAAATACAGTAAG GAATTGGGACAAGGTAACTTAACTGTACGCCGTGATGGTGAGTACGAGTTAGTTGACCGTGAAAAAGTATCTTTGATGGA CGTTTCTCCGTCACAGTTGGTTTCTATCGCAGCTTCTTTGATCCCATTCTTAGAGCATGATGATGCCAACCGTGCCTTGA TGGGATCGAACATGCAACGTCAAGCGGTGCCTCTGTTGAAATCTCGCGCTCCATTGGTTGGTACTGGCGTTGAGCGCTTA GTGGCGCGTGACTCTGGAACTTCAGTTGTTTCTTCTAACGATGGTATCGTGGAAGAAGTGGATGCTTCTCGTATCGTGGT TCGTCGTCTTGCTAAAGGCGGTGAATTGGGAGCGAACGTTGATATCTACAACTTAACGAAGTACCAACGTACAAACCAAA ATACATGTTTCAATCAAAAACCAATCGTTAAAAAAGGTGATAAAGTCTTCAAAGGCGACATCATCGCGGATGGTCCATCT ACAGAGTTAGGTGAATTGGCACTTGGACAAAACATCCTTGTCGCGTTCACTCCTTGGATGGGTTACAACTTCGAGGATTC TATCTTGATTTCAGAAAGACTTCTGAAAGAAGACACGTACACTTCAGTTCACATTGAAGAGTTCGAATGTATCGCTCGTG ACACTAAATTAGGTAAAGAAGAGATCACACGTGATATCGCTAACGTTGGTGAAGAAGCGTTAAAAGATCTTGATACTTCA GGTATCATCCGTATCGGTGCAGAAGTTAAACCGGGTTACATCTTAGTTGGTAAAGTAACTCCTAAAGGTGAAACTCAGTT ATCACCTGAGGAGAAATTATTACGCGCGATCTTCGGTGAAAAAGCCGGTGACGTTCGTGATACATCTTTACGTGTTCCAT CTGGTGTTTACGGAACTGTTATCGATGCGCAAGTTTACTCTCGTGAAGGTGCTGACCGCGACGAGCGTTTAGCTTCTATC ATCGAAGAAAAACGTATCAAATTAGAAAAAGATCTTGTTATCGAACAAAACGTTATCCGCAATAACGCTATCGAAAAATT GCGTGAAATCGTGATCGGTAAGAAAACAACTGGTATTCTTCTAAATGAAGATGGAAGTGTTAAGCTTTTAAATAAAGGCC AAGACATCACATCTGCAGACTTAGAAACAATTCCATTTGAGCTTTTGAGCTACTTACCTCTTGAGCAAGATTTAGAATTC CAAGTTAGCAAAATCATCGATGGCGCTCGTAACCAATTAGATGCTGTTAAGTTAGTATTTAATGAAAAAATCGACCGCTT GAAAAAAGGTGACGAGTTACCTCCAGGCGTAATCAAAATGGTTAAAGTTTACGTTGCTATTAAACGTAAATTGCAAGTCG GTGATAAATTCGCCGGACGTCATGGTAATAAGGGTGTTGTTTCAAAAGTATTACCTCAAGAAGACATGCCTTACTTAGCT GACGGAACTCCGGTTGACATGGTTCTGAACCCGCTGGGCGTACCTTCGCGTATGAATATCGGTCAGATCCTTGAAGTTCA CTTGGGTTGGGCCGCTCATAACTTGGGTAAACAAATCCAAGAACAATTAGAAAAATTCGATGCAGACTCTATGAGAGCTA AAATGAAAGAGATCTACCAAGATACTGACATTTCAGCAAAAGTAGATAAAGCAGACGAGACTTCATTGAAGAAGATGGCA GTTGCAATCAAAGATGGTATCCACGTTGGAACACCGGTATTTGATGGTGCGCATGAATCTGATATGCGTGATCTGTTGAA GAAAGCTGAGTTAGCGACAACTCAATCTATCTTGATTGATGGTCGTACGGGCGAGCCGTTCAGCAACGCGGTTACAGTCG GTATCATGTACATGTTGAAACTTCATCACTTGGTTGAAGAGAAGATCCATGCTCGTTCAATTGGACCTTACTCTCTAGTT TCTCAGCAGCCACTTGGCGGTAAAGCGCAATTCGGTGGTCAGCGTTTAGGGGAAATGGAAGTTTGGGCGATCGAAGCTTA CGGTGCTGCTTACTCACTACAAGAGTTCCTGACTGTTAAGTCGGATGACGTAGCGGGTAGAACTCGTATGTACGAAAGTA TCGTACGCGGCGAGAACATCCTTGAGCCGGGATTGCCAGAGTCATTTAACGTATTAATCAAAGAACTTCAGTCGTTAGCG ATGAACGTGGAATTGGTTGAGTCAGACATCTTAACAGATGACGAGCCTTTAACTGATGATCCAGAGTCAAACGCAAATGA ACCGGTTCAACACTAA Protein sequence : MNQTPITASNLRIRKSFAKNKQVIEIPNLIELQKRSYEAFLQRETDPDRRGDEGLNGVFKSVFPISDFNNTSSLEFVSYT LEPAKYDVDECRQRGMTFAAPIKVTLRLIVFDIDEETEARSIRDVKEQEVYLGEIPLMTANGSFIINGTERVVVSQLHRS PGVFFDHDGGKNNASGKLIYSARVIPYRGSWLDVEFDQKDVIHVRIDRRRKFPVTILLKALGYNVEQLLEYFYDLDEIVV KGKSLYRKLDIERMSGQRAIADIVDPKSGEVLVKAGRRITRAIVKKVKDLNLTEVEVQPQDLEGKVLAKPLIDESTGEII ADANNELTVSIIKKAVSAGIENFYLIFFDGLTVGPFLRNTLLVDKVNNKEEALIEIYKRLRPGEPPVMEAAEAYFNRLFF DAEAYDLSEVGRIKINHKFGISMEECPPSFRVLTHKDILSTVRHLIDLKNGRGVVDDIDHLGNRRVRSVGELLENQYRVG LVRMERAIKERMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRDRAGFEV RDVHPTHYGRICPIETPEGPNIGLIASLSTYARINSYGFIETPYRKVEGGRVSSEIHYMSALEEGGHFIAQAPTDEKYSK ELGQGNLTVRRDGEYELVDREKVSLMDVSPSQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLKSRAPLVGTGVERL VARDSGTSVVSSNDGIVEEVDASRIVVRRLAKGGELGANVDIYNLTKYQRTNQNTCFNQKPIVKKGDKVFKGDIIADGPS TELGELALGQNILVAFTPWMGYNFEDSILISERLLKEDTYTSVHIEEFECIARDTKLGKEEITRDIANVGEEALKDLDTS GIIRIGAEVKPGYILVGKVTPKGETQLSPEEKLLRAIFGEKAGDVRDTSLRVPSGVYGTVIDAQVYSREGADRDERLASI IEEKRIKLEKDLVIEQNVIRNNAIEKLREIVIGKKTTGILLNEDGSVKLLNKGQDITSADLETIPFELLSYLPLEQDLEF QVSKIIDGARNQLDAVKLVFNEKIDRLKKGDELPPGVIKMVKVYVAIKRKLQVGDKFAGRHGNKGVVSKVLPQEDMPYLA DGTPVDMVLNPLGVPSRMNIGQILEVHLGWAAHNLGKQIQEQLEKFDADSMRAKMKEIYQDTDISAKVDKADETSLKKMA VAIKDGIHVGTPVFDGAHESDMRDLLKKAELATTQSILIDGRTGEPFSNAVTVGIMYMLKLHHLVEEKIHARSIGPYSLV SQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVKSDDVAGRTRMYESIVRGENILEPGLPESFNVLIKELQSLA MNVELVESDILTDDEPLTDDPESNANEPVQH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 56 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 58 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 57 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 56 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 55 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 55 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 55 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 55 |
| A11Q_1917 | YP_007645740.1 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 55 |
