Gene Information

Name : H681_02205 (H681_02205)
Accession : YP_007655863.1
Strain : Pseudomonas denitrificans ATCC 13867
Genome accession: NC_020829
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 485380 - 485898 bp
Length : 519 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence :

GTGTCGGCCATCCAGATTGGCAATGGCGAACGCGTGGGTGCACTGTACCGCGATCATCGCGACTGGCTGACCGCCTGGCT
CAACCGCAGCCTGGGCTGCGTGCAGCGCGCGGAAGACCTGAGCCAGGACACCTTCGTCCGCGTGCTCGGCCGCCGCGAAC
TGCCGTCCCTGCGCGAACCCCGCGCCTTCCTGGTGACCGTCGCCAAGGGCCTGCTGGTGGACCACTGGCGCCGGATGGCG
CTGGAACAGGCCTATCTGGAGGAACTGCAGCACCTGCCCGAGGCCGTGCAGCCCTCGGCGGAAGAGCACTGCCTGATCCT
CGCCGACCTGCGCGAAATCGATCGCCTGCTGGGCAACCTGTCCGCTCGCGCGCGCAGCGCCTTCCTGCTCAACCGCCTGG
ACGGTCTCGGTCACGCCGAGATCGCCGAACAGCTCGGCGTCTCCGTGCCCCGCGTACGCCAGTACATTGCCCAGGGCCTG
CGCCAGTGCTACATCGCCCTCTACGGAACGCCGACGTGA

Protein sequence :

MSAIQIGNGERVGALYRDHRDWLTAWLNRSLGCVQRAEDLSQDTFVRVLGRRELPSLREPRAFLVTVAKGLLVDHWRRMA
LEQAYLEELQHLPEAVQPSAEEHCLILADLREIDRLLGNLSARARSAFLLNRLDGLGHAEIAEQLGVSVPRVRQYIAQGL
RQCYIALYGTPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	7e-33	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
H681_02205	YP_007655863.1	RNA polymerase sigma factor	VFG1049	Protein	3e-33	46