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Name : rpoB (MED152_04810) Accession : YP_007670989.1 Strain : Polaribacter sp. MED152 Genome accession: NC_020830 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 1067462 - 1071271 bp Length : 3810 bp Strand : - Note : DNA-directed RNA polymerase, beta subunit/140 kD subunit DNA sequence : TTGGCAACGAAAAACACTACTGAAAGAATCAACTTCGCTACTTCTCAAATGATTAAAGAATATCCAGACTTTTTGGATAT TCAGGTAAAATCTTTTCAAGATTTTTTCCAACTTCAAACTAAGGCAGAAGAAAGAGGAGAAGAAGGTTTATACAAAACCT TCATGGATAACTTTCCAATTACAGATACAAGAAATCAATTTGTATTAGAATTTTTAGACTACTTTGTAGACCCACCAAGA TATTCAATCCAAGAATGTATAGAAAGAGGTCTTACACACAGTGTTCCTTTAAAAGCACGTCTTAAATTATATTGTACAGA CCCAGAACACGAAGATTTTGAAACAATTGTACAAGATGTTTATCTTGGTACAATACCTTACATGACAAATTCAGGTACTT TTGTAATCAATGGTGCTGAGCGTGTTGTGGTTTCGCAATTACACAGATCTCCAGGTGTATTCTTTGGTCAATCATTCCAT GCAAATGGAACTAAGTTGTATTCAGCAAGAGTAATTCCTTTTAAAGGATCTTGGATAGAATTTGCAACAGATATCAATCA AGTAATGTATGCTTATATTGATAGAAAGAAAAAATTACCTGTAACTACTTTATTCAGAGCAATTGGTTTTGAAAGAGATA AAGATATTTTAGAAATTTTTGACCTTGCTGAGGAAGTTAAGGTTTCTAAGGCAGGTCTTAAAAAAGTATTAGGTCGTAAA TTGGCTGCTAGAGTTTTAAAAACTTGGCATGAAGATTTCGTAGATGAAGATACAGGAGAAGTTGTATCTATTGAGAGAAA TGAAATTATTTTTGATCGTGATACAGTTTTAGAAAAAGAACATATAGATGAAATTATAGAGGCAGGAGCTAAGACGATTT TACTACATAAAGTAGATAATCATATGGCTGACTATGCTATAATTCACAATACTTTACAAAAAGATCCTACAAACTCAGAG AAAGAAGCTGTAGAGCATATTTATAGACAATTACGTAATGCAGAACCGCCAGATGAAGAGACTGCAAGAGGTATTATCGA TAAATTATTCTTCTCTGAACAAAGATATAATTTAGGAGAAGTTGGTCGTTTTAGAATGAATACCAAACTTCAATTAAATG AGCCTATAGATCAAAAGGTATTGACAAAATTAGATATTATAACTATCATTAAATATTTAATTGAGTTAATTAACTCTAAG GCAGAAGTAGATGATATTGATCACTTATCTAACAGACGTGTAAGAACTGTGGGTGAGCAATTAGCAGGTCAGTTTGGTGT TGGTTTAGCAAGAATGGCGAGAACAATTCGTGAGCGTATGAATGTACGTGACAATGAAGTGTTTACTCCAATTGATTTAA TTAACGCAAAAACATTATCATCGGTAATTAATTCTTTCTTTGGTACCAATCAATTATCTCAATTTATGGATCAAACAAAT CCATTAGCTGAGATTACCCACAAACGTAGATTATCTGCATTAGGGCCAGGTGGTTTATCAAGAGAAAGAGCAGGTTTCGA GGTTCGTGATGTACACTATACACATTATGGTCGTTTATGTCCGATTGAAACACCTGAAGGACCAAACATTGGTCTAATTT CTTCGCTTTCTGTTTTTGCGAAAGTGAATAATTTAGGATTTATCGAAACTCCTTATAGAAAAGTAAACAATGGAATTGTT GAAGGTGAAGAGCCAATCTATTTAAGTGCTGAAGAAGAAGAGGGTAAGAAAATTGCGCAATCTAATTTAGAACTTAAAGA AGATGGTAGCATTGTTTTAGATAGAGTTATTGCACGTGAGGAAGGTGATTTCCCAGTAGTTAATCCTGAAGTGATTGATT ATATGGATGTTGCACCAAACCAAATTGCCTCTATCTCTGCATCTTTAATTCCTTTCTTAGAGCATGATGATGCCAACAGA GCATTGATGGGATCAAACATGATGCGTCAGGCAGTGCCATTATTAAGACCAGAATCGCCAATTGTTGGTACTGGATTAGA AAGAAGAGTTGCTAAAGATTCACGTATTTTAATTAATGCAGAAGGTGAAGGTGAAGTAACTTATGTAGATGCAAATAAAA TTACAATTAGGTATGATAAAACAGATGAAGAAAGACTAGTAAGTTTTGATTCTGATGAAGTATCTTATGACTTAATTAAA TTTAGAAAAACCAATCAAGGTACATCTATTAACTTAAAGCCAATTGTAGAAACTGGTGATAGAGTTCAAGAAGGTCAAGT ACTTTGTGAAGGTTATGCAACACAAAAAGGAGAATTAGCTTTAGGTAGAAACATGAAAGTAGCCTTTATGCCTTGGAAAG GGTATAACTTTGAGGATGCAATTGTGATTTCTGAAAAAGTAGTTCGTGAAGATATATTTACATCTATTCATATTGATGAG TATTCTTTAGATGTTAGAGATACAAAATTAGGAACTGAAGAGTTAACTAATGATATTCCTAACGTTTCTGAAGAAGCTAC AAAAGATTTAGATGAAAATGGAATGATTAGAATTGGAGCAGAAGTAAATCCTGGTGATATCTTAATTGGTAAAATTACAC CAAAAGGAGAATCTGACCCAACTCCAGAAGAAAAATTATTACGTGCAATTTTTGGTGACAAAGCAGGTGATGTAAAAGAT GCATCATTAAAAGCTTCTCCATCATTAAGAGGTGTAGTAATTGATAAAAAATTATTTAGAAGAGCTGTAAAAGATAAAAA CAAAAGAATTAGAGATAAAGAAGCAGTGGCTACTTTAGAACAATCTTTTGTTTCTAAATTCGAAGGTTTAAAAGACGAGT TAATTGAGAAGTTATTTACTTTAATTAGTGGAAAAACATCTCAAGGGGTCTTTAACGATTTAGGAGAAGAAGTTTTACCA AAAGGTAAAAAATATACGCTTAAAATGTTAAACTCAGTAGACGATTATGTTCACTTAACAGGTTCTTGGACAACTGATAG TGACTTAAATGCTTTAGTTGGTGAATTAGTTCACAACTATAAGATTAAGGTTAATGATTTACAAGGTTCTTTAAGACGTC AGAAATTTACAATTTCAGTTGGAGATGAATTACCAGCAGGAATATTAAAATTAGCTAAAGTTTACATCGCTAAAAAACGT AAGTTAAAAGTGGGTGATAAAATGGCTGGACGTCATGGAAACAAAGGTATTGTAGCACGTATTGTAAGAGCAGAAGACAT GCCGTTCTTAGAAGATGGTACACCTGTAGATATTGTATTGAATCCATTAGGGGTACCTTCACGTATGAACATTGGTCAAA TTTATGAAACTGTTCTAGGTTGGGCAGGTGAGAAATTAGGAACTAAATATGCAACACCTATTTTTGATGGAGCATCTTTA GATCAGATTAATGAAATTACAGATGAAGCAGGAGTACCAAGATTTGGACACACTTATTTATATGATGGAGGAACTGGAAA ACGTTTCGATCAACCAGCAACAGTTGGTATCATTTATATGATTAAGTTAGGGCACATGATTGAAGATAAGATGCACGCTC GTTCAATAGGACCATATTCTTTAATTACACAACAACCATTAGGAGGTAAAGCACAGTTTGGTGGTCAGCGTTTTGGAGAG ATGGAAGTTTGGGCACTTGAGGCATATGGAGCATCAAGTATCTTAAGAGAAATCTTAACTGTAAAATCTGATGATGTAAT GGGTAGAGCTAAAACATACGAAAGTATAGTTAAAGGGGAAGCTATGCCAGAACCAGGTTTACCAGAATCGTTTAACGTAT TAATGCATGAACTTAAAGGTTTAGGATTAGACGTTAGATTAGAAGAATAA Protein sequence : MATKNTTERINFATSQMIKEYPDFLDIQVKSFQDFFQLQTKAEERGEEGLYKTFMDNFPITDTRNQFVLEFLDYFVDPPR YSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTNSGTFVINGAERVVVSQLHRSPGVFFGQSFH ANGTKLYSARVIPFKGSWIEFATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKAGLKKVLGRK LAARVLKTWHEDFVDEDTGEVVSIERNEIIFDRDTVLEKEHIDEIIEAGAKTILLHKVDNHMADYAIIHNTLQKDPTNSE KEAVEHIYRQLRNAEPPDEETARGIIDKLFFSEQRYNLGEVGRFRMNTKLQLNEPIDQKVLTKLDIITIIKYLIELINSK AEVDDIDHLSNRRVRTVGEQLAGQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTN PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAKVNNLGFIETPYRKVNNGIV EGEEPIYLSAEEEEGKKIAQSNLELKEDGSIVLDRVIAREEGDFPVVNPEVIDYMDVAPNQIASISASLIPFLEHDDANR ALMGSNMMRQAVPLLRPESPIVGTGLERRVAKDSRILINAEGEGEVTYVDANKITIRYDKTDEERLVSFDSDEVSYDLIK FRKTNQGTSINLKPIVETGDRVQEGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDE YSLDVRDTKLGTEELTNDIPNVSEEATKDLDENGMIRIGAEVNPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKD ASLKASPSLRGVVIDKKLFRRAVKDKNKRIRDKEAVATLEQSFVSKFEGLKDELIEKLFTLISGKTSQGVFNDLGEEVLP KGKKYTLKMLNSVDDYVHLTGSWTTDSDLNALVGELVHNYKIKVNDLQGSLRRQKFTISVGDELPAGILKLAKVYIAKKR KLKVGDKMAGRHGNKGIVARIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGEKLGTKYATPIFDGASL DQINEITDEAGVPRFGHTYLYDGGTGKRFDQPATVGIIYMIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE MEVWALEAYGASSILREILTVKSDDVMGRAKTYESIVKGEAMPEPGLPESFNVLMHELKGLGLDVRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 46 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| rpoB | YP_007670989.1 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 45 |
