Gene Information

Name : CCU_12880 (CCU_12880)
Accession : YP_007796258.1
Strain : Coprococcus sp. ART55/1
Genome accession: NC_021018
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1311439 - 1314015 bp
Length : 2577 bp
Strand : -
Note : -

DNA sequence :
ATGGAGATGGATAAATACACACGTAAATCGTTGGAAGTTGTAGAGAAAGCAAAAGAAAAAGCTCTGGAGTACGACAATCA
GGAACTTACGCAGATGCACCTTTTGGCTGGCTTGCTTGAGATAGATGACAGTTTGATAGCCAAGATATTTGAGAAGATGG
GCGTGAATGTTACTAGTGCCGTGAATGCGGTGGAGGATAAGCTGGCAAGGTTGCCGAAGGTCAGCGGAGGCAATATGTAT
GCCGGAAATAACTTCTCAAAGGCTCTCATCCAGGCAGAGAAGGAAGCAAAGCAGATGGGCGACACATATGTGTCTGTTGA
GCATTTGTTCCTCGGCATGGTGGATAAGGCTGATTCGGATATCAAGGAGCTTCTTAAAGGCTGGGGAGTTAGCAGGAATG
CATTCCTCAAGGAGCTGGCAGAAATCAGAGGTAACCACAAGGTGGACAGCGATGATCCGGAGAGCTCATATGAGGCTATG
GAGAAGTTCGGATATGATCTGGTCGAGAGGGCAAGACAGCAGAAACTTGACCCGGTAATAGGACGTGACGCTGAGATACG
AAATGTGATCAGGATCCTGTCAAGGAAGACAAAGAACAATCCGGTGCTTATCGGTGAGCCTGGTGTAGGTAAGACTGCGG
TTGTAGAGGGACTTGCACAGAGGATACTCAGAGGTGATGTACCAGAGGGACTTAAGAACAAGAAGATATTTGCACTTGAT
ATGGGAGCTCTTGTGGCCGGTGCCAAGTACAGAGGTGAATTTGAAGAGAGACTTAAGAATGTCCTTGATGAGGTTAAGAA
GTCTGAGGGTGAAGTGATCATGTTCATCGATGAGCTTCACACTATCGTCGGAGCAGGCAAGACTGATGGTGCAATGGATG
CGGGAAACATGCTTAAGCCTATGCTCGCCAGAGGTGAGCTGCACTGTATAGGTGCCACAACACTGAACGAGTACAGACAG
TATATAGAGAAGGATGCGGCTCTTGAGAGACGTTTCCAACCAGTTATGGTGGATGAGCCAACCGTTGAAGATACAATATC
TATCCTTCGAGGAATCAAGGAGAGGTACGAGGTGTTCCATGGAGTTAAGATATCAGATGGTGCCCTTGTAAGCGCAGCGG
TTCTTTCCAACAGATATATAACAGACAGATTCCTGCCGGATAAGGCAATAGATCTTGTTGACGAGGCGTGTGCCATGATC
AAGACAGAGCTTGATTCAATGCCTGTTGAAGTGGATGAGATCACACGTAAGATAATGCAGCTGGAGATTGAGGAGACAGC
CCTTAAGAAGGAGGAGGATAATCTGTCAAAGCAGAGACTGGCAGACCTTCAGGCTGAACTGGCAGAACTCAAGGATCAGG
CAAATTCCCTGAAAGCAAAGTGGGAGAATGAAAAGGCTGCAGTTGAGAAGATAAGAACCCTCAAGGAAGAGATGGAGCAG
GTCAAGGCTGATATTCAGGCTGCACAGAGAAATTATGATCTGAACAAGGCAGCAGAGCTTCAGTATGGTAAGCTTCCAGC
GATCCAGAAAGAGCTTGCAGAGGCTGAGTCCACAGCTTCAGATAAGGAGAGGGAGCTTGTTCATGAGGTGGTTTCAGAAG
ATGAGATATCGAAGATCGTATCCAAGTGGACAGGAATTCCTGTTGCAAAGCTTACTGAGAGCGAGAAGAGCAAGACCCTC
AATCTTGCCAGCGAACTTAAGAAGAGAGTTGTAGGGCAGGATGAAGCCGTTGACTATGTCAGCGATGCGATCATCAGATC
AAAGGCGGGAATAAAGGATCCTAGCAAACCGATAGGTTCATTTATCTTCCTTGGACCAACCGGTGTTGGTAAGACAGAGC
TTGCAAAAAGTCTTGCAGCGGCATTGTTTGACAATGAGCAGAACATGGTTCGTATTGATATGAGTGAATACATGGAAAAG
CACAGTGTGTCAAGACTTATAGGAGCGCCTCCGGGATATGTAGGTTATGATGAAGGCGGTCAGCTGACAGAGGCTGTTCG
TAGAAAGCCATATTCGGTTGTCCTCTTTGATGAGATAGAGAAGGCACATCCGGATGTGTTCAATGTGCTCCTTCAGGTAC
TTGATGACGGACGTATCACGGATTCTCAGGGCAGAACGGTGGACTTCAAGAATACGATCATCATCATGACATCCAATATC
GGCGGTGCAGATATTGCAGCTGCCGGCGGAGAGATCACAGATGAACTGAAGAATGACGTAATGGCTCAGCTTAAGAGCAG
ATTCAGACCTGAGTTCCTGAACCGTATCGATGAGATCATTACATTCAGGGCACTGTCCAAGGACAACATCAGTGGTATAG
TTGATCTTCTCATGGCAGATCTCAACAGCAGACTGGCAGACAGAGAGATCACTATCAAACTTACGGAGAGTGCAAAGCAG
CACATCATCGATCAGGGATATGATCAGGTGTATGGTGCAAGACCGCTCAAGAGATATCTGCAGAAGAATGTGGAGACTCT
TGTTGCCAGGATGATACTTGCGGGCAGCGTGAGCACACAGTCAGCCATAGTCATCGATTATGATGGAACGGCTCTTGTGG
CAGGAAATGAGAGATAA

Protein sequence :
MEMDKYTRKSLEVVEKAKEKALEYDNQELTQMHLLAGLLEIDDSLIAKIFEKMGVNVTSAVNAVEDKLARLPKVSGGNMY
AGNNFSKALIQAEKEAKQMGDTYVSVEHLFLGMVDKADSDIKELLKGWGVSRNAFLKELAEIRGNHKVDSDDPESSYEAM
EKFGYDLVERARQQKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAVVEGLAQRILRGDVPEGLKNKKIFALD
MGALVAGAKYRGEFEERLKNVLDEVKKSEGEVIMFIDELHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYRQ
YIEKDAALERRFQPVMVDEPTVEDTISILRGIKERYEVFHGVKISDGALVSAAVLSNRYITDRFLPDKAIDLVDEACAMI
KTELDSMPVEVDEITRKIMQLEIEETALKKEEDNLSKQRLADLQAELAELKDQANSLKAKWENEKAAVEKIRTLKEEMEQ
VKADIQAAQRNYDLNKAAELQYGKLPAIQKELAEAESTASDKERELVHEVVSEDEISKIVSKWTGIPVAKLTESEKSKTL
NLASELKKRVVGQDEAVDYVSDAIIRSKAGIKDPSKPIGSFIFLGPTGVGKTELAKSLAAALFDNEQNMVRIDMSEYMEK
HSVSRLIGAPPGYVGYDEGGQLTEAVRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRITDSQGRTVDFKNTIIIMTSNI
GGADIAAAGGEITDELKNDVMAQLKSRFRPEFLNRIDEIITFRALSKDNISGIVDLLMADLNSRLADREITIKLTESAKQ
HIIDQGYDQVYGARPLKRYLQKNVETLVARMILAGSVSTQSAIVIDYDGTALVAGNER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 3e-104 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CCU_12880 YP_007796258.1 ATP-dependent chaperone ClpB VFG2084 Protein 2e-113 43
CCU_12880 YP_007796258.1 ATP-dependent chaperone ClpB VFG2076 Protein 8e-120 42