Gene Information

Name : SY1_12340 (SY1_12340)
Accession : YP_007827630.1
Strain : Synergistetes bacterium SGP1
Genome accession: NC_021038
Putative virulence/resistance : Virulence
Product : type I secretion system ABC transporter, HlyB family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1361081 - 1363321 bp
Length : 2241 bp
Strand : +
Note : -

DNA sequence :
ATGTTCGACGAAGTTCATGACCCAACGCATAGAGCCGGCGATCCGGAGGAGATAAAAAGGGAGAACCTACGGCTGTTTGA
CGACGCCCTCCTGGCGCTTGCCGTCGCCGCTCAGATCGCCGGCCTTCCAGCAGACCCGGAAGGGCTGCGGCGCGCTTTTC
CTGCGAGCGACGCCGGCGCCCTTCCGCTGACCTTGCTGCGCGCAGCAAGGAGCCTTGGGCTGAAGGCGAAGAGGATCGAG
ACGTCTCTCGAAAAACTTGACCGAATGCCTCAGCCCACGCTCCTGCTGCTTCCCGATGGACAGGTGTTCGTCCTCCTCGC
GGCAGATTTCAAGAAGGACAAAAAGCGGGTCATGTTGCTTCGCCCCGGCGAGAAGCAGCCGTTCGTCTGGGACTGCGCCC
GGCTTGAAGAGGTCTGGCACGGCGACGCCATCCCGCTGGTCCGCCGCTTCTCCTTCGCGGAGCTGGGGCGGAAGTTTGGC
ATCGGCTGGTTTCTCCCCGTCATCTTGCGCTTCAAGCGGCACCTTGTCGAGGTGTTCGTCGGCTCCTTTTTCCTTCAGAC
GTTCGGCCTCATCACGCCCCTTTTCAGCCAGGTCATCATCGATAAGGTCCTCGTTCACAAAGGGCTCTCCACCCTGGACG
TGCTCGTGATCGGGCTGTTCCTCATCAACGTTTTTGAGATGGTGTTGAACGTGACCCGCACCTACGTCTTCTCCCACACG
ACGAACAGGGTGGACGTCATCCTTGGAGCGAAGCTCTTCAAGCACCTTCTGGCGCTGCCTCTGCCCTATTTCGAGGCCCG
GACGGTGGGGAGCACCATAGCGCGCATCCGGGAGCTTGAGACCATCCGGTCCTTTATCACGGGAACGGCGTTGACTGTCG
TGCTGGACCTCATCTTCACCATCGTTTTCATCGCGGTGATGTTTTTCTACAGCCCCACGCTGACGCTGATATCCCTTGCG
GCGCTGCCGTTTTTCATCGCGCTCTCCGCGATGGCGACCCCTGCCATCCGCGAGCGGCTGAACCGGAAATTCGAGCGCAA
TGCGGAGAATCAGTCGTACCTCGTCGAGATGGTGACGGGAATTCAAACGGTAAAAAGCCTCGCCATCGAGCCGCAGTTGA
ACGGCCGGTGGGAGGGGATGCTGGCAAATTATGTTCGTGCCTCCTTTCGGGCGGGGTTCCTGAGCAGCCTTGCAGGCGGC
GTGGCCCAGCTAATCCAGAAGACCTCCACGCTGGCCATCCTCTGGTTTGGGGCCCGGATGGTGATGAAGGGGGACTTCAC
GGTCGGCCAGCTCATCGCCTTTCAGATGCTCTCCGGACGGGTGACGGAACCCATCCTGCGGCTTGCCACGCTGTGGCAGG
ATTTTCAGCAGGTGCGCGTCTCCATCGAGCGCCTGGGCGAGGTGCTCAACTTCCCGGCGGAGCCGGAGAGCACGCCCGGC
CGCAGCTCTCTGGGGCGCGTCAGGGGCCGCATCGAGTTCGATCACGTACAATTCCGCTACAAAATGGACGGCCCGCCGAT
CCTGGATGACGTCAACCTCGTGATCGAGCCGGGGACGACGGTGGGCATCGTGGGGCGGTCCGGCTCCGGCAAGAGCACGT
TGACGAAGTTGGTACAGCGCTTTTACGTTCCGGTCAACGGCCGCGTCCTGGTGGACGGCGTGGACCTGGCGCAGGTCAAC
CCGCCGTGGCTGAGACGGCAGATCGGCGTCGTGCTTCAGGAGAGCTTTCTGTTCAACCGCAGCATCCGGGACAACATCGC
CGTCGTGGACACCGCCGCCCCGCTGGACAGGATCATCGCCGCAGCGAAGCTGGCGGGTGCCCACGACTTCATCATGGAGC
TTCCCGACGCCTACGACACGCTTGTGAGCGAACGCGGCGCTTCCCTGTCGGGAGGGCAGCGTCAGCGCATCGCGATCGCC
AGGACGCTCATGACGAACCCGCGCATCCTGATCTTCGACGAGGCCACCAGCGCGCTGGATTATGAGTCCGAGCGCATCAT
CCAGCACAACCTCCAGGACATATGCAGGGGCCGCACGGTCTTCATCATCGCGCACAGGCTCTCCACGGTGCGCATGGCGG
ACGTCATCATCGCCATGGACCGGGGCCGCATCGTTGAACGCGGCACGCACGACGAGCTTCTGGGCAACGCGGATGGACTG
TACAGCTTCCTCTACCGCCAGCAGGCGCTTCTGGGCGACGAAGGCTCCTGGGAAGGAGGGCGGAAAACGTGTTCGGCTTG
A

Protein sequence :
MFDEVHDPTHRAGDPEEIKRENLRLFDDALLALAVAAQIAGLPADPEGLRRAFPASDAGALPLTLLRAARSLGLKAKRIE
TSLEKLDRMPQPTLLLLPDGQVFVLLAADFKKDKKRVMLLRPGEKQPFVWDCARLEEVWHGDAIPLVRRFSFAELGRKFG
IGWFLPVILRFKRHLVEVFVGSFFLQTFGLITPLFSQVIIDKVLVHKGLSTLDVLVIGLFLINVFEMVLNVTRTYVFSHT
TNRVDVILGAKLFKHLLALPLPYFEARTVGSTIARIRELETIRSFITGTALTVVLDLIFTIVFIAVMFFYSPTLTLISLA
ALPFFIALSAMATPAIRERLNRKFERNAENQSYLVEMVTGIQTVKSLAIEPQLNGRWEGMLANYVRASFRAGFLSSLAGG
VAQLIQKTSTLAILWFGARMVMKGDFTVGQLIAFQMLSGRVTEPILRLATLWQDFQQVRVSIERLGEVLNFPAEPESTPG
RSSLGRVRGRIEFDHVQFRYKMDGPPILDDVNLVIEPGTTVGIVGRSGSGKSTLTKLVQRFYVPVNGRVLVDGVDLAQVN
PPWLRRQIGVVLQESFLFNRSIRDNIAVVDTAAPLDRIIAAAKLAGAHDFIMELPDAYDTLVSERGASLSGGQRQRIAIA
RTLMTNPRILIFDEATSALDYESERIIQHNLQDICRGRTVFIIAHRLSTVRMADVIIAMDRGRIVERGTHDELLGNADGL
YSFLYRQQALLGDEGSWEGGRKTCSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 0.0 53
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 0.0 53
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 0.0 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SY1_12340 YP_007827630.1 type I secretion system ABC transporter, HlyB family VFG0907 Protein 0.0 53
SY1_12340 YP_007827630.1 type I secretion system ABC transporter, HlyB family VFG1557 Protein 0.0 53
SY1_12340 YP_007827630.1 type I secretion system ABC transporter, HlyB family VFG1501 Protein 0.0 53
SY1_12340 YP_007827630.1 type I secretion system ABC transporter, HlyB family VFG0841 Protein 1e-173 52
SY1_12340 YP_007827630.1 type I secretion system ABC transporter, HlyB family VFG1269 Protein 2e-162 50