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Name : rpoB (BTI_344) Accession : YP_007916865.1 Strain : Genome accession: NC_021173 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 383516 - 387622 bp Length : 4107 bp Strand : + Note : rpoB: DNA-directed RNA polymerase, beta subunit DNA sequence : ATGCAATATTCCTTCACCGAGAAGAAGCGTATTCGCAAGAGTTTCGCGAAGCGCTCCATCGTTCACCAAGTGCCTTTCCT GCTGGCCACCCAGCTTGAATCATTCAGCACATTTCTGCAAGCCGATGTGCTGCCCGCGCAACGCAAGTCCGAGGGGTTGC AGGCCGCCTTCACATCGGTGTTTCCCATCGTCTCGCATAACGGCTTCGCTCGTCTCGAGTTCGTGAGCTATGCGTTGTCG TCGCCGGCATTCAACATCAAGGAATGTCAGCAGCGCGGCCTGACCTATTGCTCGGCATTGCGCGCGAAGGTGCGCCTCGT GCTCCTCGACAAGGAGTCGCCGAACAAGCCCGTCGTCAAGGAAGTGAAGGAACAGGAAGTGTACATGGGCGAAATTCCGC TCATGACGCCGACCGGTTCGTTCGTCATCAACGGCACCGAGCGCGTGATCGTGTCGCAGTTGCACCGTTCGCCCGGCGTG TTCTTCGAGCACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCCGCGCGGATCATTCCGTACCGCGGTTC GTGGCTCGACTTCGAATTCGATCCGAAGGACGTGCTGTACTTCCGCGTCGACCGTCGTCGCAAGATGCCGGTCACGATCC TGCTGAAGGCGATCGGCCTCACGCCGGAGCTGATCCTCGCGAACTTCTTCGTCTTCGACAACTTCACGCTGATGGACGAA GGCGCGCAGATGGAGTTCGTGCCCGAGCGCCTGCGCGGTGAAGTGGCCCGCTTCGACATCACCGATCGCGAAGGCAAGGT CATCGTCCAGAAGGACAAGCGGATCAACGCGAAGCACATTCGCGATCTCGAAACCGCGAAGACCAAGTACATCTCGGTGC CCGAAGACTATCTGCTCGGCCGCGTGCTGGCGAAGAACGTCGTCGACGGCGACACGGGCGAAGTGATCGCGAACGCGAAC GACGAGATCACGGAAGGCGTGCTCGAGAAGCTGCGCGAGGCGAAGATCAAGGAAATCCAGACGCTCTATACGAACGATCT GGACCAGGGGCCGTACATCTCGTCGACGCTGCGTGTCGACGAAACCGTCGACAGGACGGCCGCGCGCATCGCGATCTACC GGATGATGCGCCCGGGCGAGCCGCCGACGGAAGAAGCCGTCGAGGCGCTCTTCAACCGCCTGTTCTACAGTGAAGACGCG TACGACCTGTCGAAGGTCGGCCGCATGAAGTTCAACCGCCGCGTCGGCCGTGACGAAATCACCGGCCCGATGACGCTGCA GGACGACGACATCCTCGCGACGATCAAGATCCTCGTCGAGCTGCGCAACGGCAAGGGCGAAGTGGACGACATCGACCACC TCGGCAACCGGCGCGTGCGCTGCGTCGGCGAACTGGCGGAAAACCAGTTCCGCGCGGGCCTCGTGCGCGTCGAGCGCGCG GTGAAGGAGCGCCTCGGCCAGGCCGAAAGCGAAAACCTGATGCCGCACGACCTGATCAACTCGAAGCCGATTTCGTCGGC GATTCGCGAGTTCTTCGGTTCGTCGCAGTTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATCACGCACAAGC GCCGTGTTTCCGCACTGGGCCCGGGCGGTCTCACGCGCGAGCGCGCGGGCTTCGAAGTCCGCGACGTGCACCCGACCCAC TACGGCCGCGTGTGCCCGATCGAAACGCCGGAAGGCCCGAACATCGGTCTCATCAACTCGCTCGCACTGTATGCGCACCT GAACGAATACGGCTTCCTCGAGACGCCGTACCGCAAGGTCGCCGACAGCAAGGTGACCGACCAGATCGATTATCTGTCGG CGATCGAGGAAGGCCGCTACATGATCGCGCAGGCGAACGCCGCGATCGGCGAAGACGGCACGCTCGTCGACGAACTGGTG TCGTCGCGTGAAGCCGGCGAAACGATGATGGTCACGCCGGACCGCATCCAGTACATGGACGTCGCGCCGTCGCAGATCGT GTCGGTTGCGGCCTCGCTGATCCCGTTCCTCGAGCACGACGATGCGAACCGTGCGCTGATGGGCTCGAACATGCAGCGTC AGGCCGTGCCGTGTCTGCGTCCGGAGAAGCCCGTCGTCGGCACCGGCATCGAGCGCACCGTGGCGGTCGACTCGGGCACG ACGGTGCAGGCGCTGCGCGGCGGCGTCGTCGACTATGTCGACGCGGGCCGTATCGTCATTCGCGTGAACGATGACGAAGC GGCCGCGGGCGAAGTCGGCGTCGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACGAACATCAACCAGC GTCCGATCGTGAAGATGGGCGACAAGGTCTCGCGCGGCGACGTGCTGGCCGACGGCGCGTCGACGGACCTGGGCGAGCTC GCGCTCGGCCAGAACATGCTGATCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGATTCGATCCTGATCTCGGAGCG TGTCGTCGCGGACGATCGCTACACGTCGATCCACATCGAAGAGCTGAACGTGGTCGCTCGCGACACGAAGCTCGGGCCGG AAGAAATCACGCGCGACATCTCGAACCTCGCGGAAGTCCAGCTCGGCCGTCTCGACGAATCGGGCATCGTGTACATCGGC GCGGAAGTCGAAGCGGGCGACGTGCTGGTCGGCAAGGTCACGCCGAAGGGCGAAACCCAGCTCACGCCGGAAGAGAAGCT GCTGCGCGCGATCTTCGGCGAGAAGGCGTCGGACGTGAAGGACACGTCGCTGCGCGTGCCGTCGGGCATGAGCGGCACGG TGATCGACGTCCAGGTCTTCACGCGTGAAGGCATCCAGCGCGACAAGCGCGCGCAACAGATCATCGACGACGAACTGAAG CGCTACCGTCTCGACCTGAACGACCAGCTCCGCATCGTCGAAGGCGACGCGTTCCAGCGTCTCGCGCGCATGCTCGTGGG CAAGGTCGCGAACGGCGGTCCGAAGAAGCTCGCGAAGGGCACGAAGATCGACCAGGCCTACCTGGAAGACCTCGACCACT ATCACTGGTTCGACATCCGCCTGGCGGACGACGAAGCGGCCGCCCAGCTCGAAGCGATCAAGAACTCGATCGAAGAGAAG CGCCACCAGTTCGACCTCGCGTTCGAAGAGAAGCGCAAGAAGCTCACGCAAGGCGACGAACTGCCGCCGGGCGTGCTGAA GATGGTCAAGGTGTACCTCGCGGTGAAGCGCCGCCTGCAGCCCGGCGACAAGATGGCCGGCCGTCACGGTAACAAGGGCG TCGTGTCGAAGATCGTTCCGGTCGAAGACATGCCGTACATGGCCGACGGCCGTCCGGCCGACGTCGTGCTGAACCCGCTC GGCGTGCCGTCGCGGATGAACGTGGGTCAGGTTCTGGAAGTGCATCTCGGCTGGGCCGCGAAGGGCCTCGGCTGGCGTAT CGGCGAAATGCTGCAACGTCAGGCGAAGATCGAGGAGCTGCGCGTGTTCCTGACGAAGATCTACAACGAGTCGGGCCGCG CGGAAGATCTGGAAAGCTTCACCGACGACGAGATCCTCGAGCTCGCGAAGAACCTGCGCGAAGGCGTGCCGTTCGCGACG CCGGTGTTCGACGGTGCGACCGAGGAAGAAATGTCGAAGATGCTCGACCTCGCGTTCCCGGACGACATCGCCGAACAGCT CGACATGAACCCGTCGAAGAATCAGGTGCGCCTGTACGACGGCCGCACGGGCGAGCCGTTCGAGCGCCGCGTGACGCTCG GCTACATGCACTACCTGAAGCTGCACCACCTCGTCGACGACAAGATGCACGCGCGCTCGACGGGCCCGTACTCGCTCGTC ACGCAGCAGCCGCTCGGCGGCAAGGCGCAGTTCGGCGGCCAGCGTTTCGGTGAAATGGAAGTGTGGGCGCTCGAAGCGTA TGGCGCTTCGTACGTGCTGCAGGAAATGCTGACGGTGAAGTCGGACGACGTGACCGGCCGGACCAAGGTTTATGAAAACC TGGTCAAGGGCGACCATGTCATCGATGCCGGCATGCCCGAGTCGTTCAACGTGTTGGTGAAGGAAATCCGGTCGCTCGGT ATCGACATCGACCTGGACCGGAACTAA Protein sequence : MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVLPAQRKSEGLQAAFTSVFPIVSHNGFARLEFVSYALS SPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPNKPVVKEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGV FFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPELILANFFVFDNFTLMDE GAQMEFVPERLRGEVARFDITDREGKVIVQKDKRINAKHIRDLETAKTKYISVPEDYLLGRVLAKNVVDGDTGEVIANAN DEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTLRVDETVDRTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDA YDLSKVGRMKFNRRVGRDEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH YGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVADSKVTDQIDYLSAIEEGRYMIAQANAAIGEDGTLVDELV SSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT TVQALRGGVVDYVDAGRIVIRVNDDEAAAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMGDKVSRGDVLADGASTDLGEL ALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIG AEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIRLADDEAAAQLEAIKNSIEEK RHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPL GVPSRMNVGQVLEVHLGWAAKGLGWRIGEMLQRQAKIEELRVFLTKIYNESGRAEDLESFTDDEILELAKNLREGVPFAT PVFDGATEEEMSKMLDLAFPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTLGYMHYLKLHHLVDDKMHARSTGPYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLG IDIDLDRN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 82 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 77 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 74 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 66 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 65 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | AM180355.1.gene120.p | Protein | 0.0 | 46 |
| rpoB | YP_007916865.1 | DNA-directed RNA polymerase, beta subunit | NC_012469.1.7686402. | Protein | 3e-177 | 44 |
