Gene Information

Name : Clopa_0023 (Clopa_0023)
Accession : YP_007938811.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 29074 - 29754 bp
Length : 681 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGATAGAAGTAAAAAATGTTTCAAAAACTTACAAAATGGGAAAGGAAATAGTTACAGCTCTAGATAATGTAAATGTTAG
AATAAACGATGGTGAATTTGTAGCTATTGTTGGACCCTCTGGTTCCGGTAAATCCACTCTTATGCACCTAGTAGGAGGTC
TTGATACCCCTACCTCAGGAAGTATTTATGTTGACGGTAAAGATATTAGTAAATTAAAGGACAAATATATGTCCATATAC
AGAAATGAAACAATAGGCTTTGTTTTCCAAGCTTTTAATCTTGAAAATACTCAGACAGCACTGGAAAATGTAATGATGCC
TCTTATATTTGCAGGAGTAGGAGGAAGAGAAAGAAAAGAAAAAGCTAAGAACGCTCTTGAGATGGTTGGCCTAGGAGATA
AAATAAGGCACAGACCTACTGAAATGTCTGGTGGACAAAGACAGAGGGTAAGTATTGCAAGAGCTCTTGTAAATGAACCA
AAAATAATTTTTGCTGATGAACCTACTGGAAATCTTGACTCTAAAAATGGTGAACTTATAATGAATCTCTTAACAGATTT
AAATGAAAAAGGTTATACCATAATTATGGTTACACATAATATGGATGAAGCAAAAAACTCTAAAAGAATAATAAAAATTA
AAGACGGACAAGTTCAGGAGGTGTCAAAGGATGAAATTTAG

Protein sequence : 
MIEVKNVSKTYKMGKEIVTALDNVNVRINDGEFVAIVGPSGSGKSTLMHLVGGLDTPTSGSIYVDGKDISKLKDKYMSIY
RNETIGFVFQAFNLENTQTALENVMMPLIFAGVGGRERKEKAKNALEMVGLGDKIRHRPTEMSGGQRQRVSIARALVNEP
KIIFADEPTGNLDSKNGELIMNLLTDLNEKGYTIIMVTHNMDEAKNSKRIIKIKDGQVQEVSKDEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0023 YP_007938811.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 7e-53 53
Clopa_0023 YP_007938811.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 7e-42 45
Clopa_0023 YP_007938811.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 8e-43 43
Clopa_0023 YP_007938811.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 2e-39 43