Gene Information

Name : Clopa_3604 (Clopa_3604)
Accession : YP_007942063.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Unknown
Product : transketolase, beta subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3606904 - 3607725 bp
Length : 822 bp
Strand : -
Note : PFAM: Transketolase, thiamine diphosphate binding domain

DNA sequence : 
ATGAAAAATGATCTAAGGCTTCTTAAGAAAACTGCTATAAGTATTAGAGAAGATATCATAACCATGTTGACTGAATCAGC
TTCAGGCCATCCAGGAGGTTCTTTATCTTCAGTAGAAATAATGACAACTTTATATTTTAAAGAGATGAATATAAATCCTG
AAAACCCAAAGGATGAGAATAGGGATAGATTTGTGCTATCTAAAGGGCATGCAGCACCAGCTCTCTATAGTACATTGGCT
GAAAGAGGTTATTTTAATAAAGATGAACTGAAGGGGCTTAGAAAGTTTGGGTCTATATTACAAGGTCATCCTAATATGAA
TTATGTACCTGGAGTAGACATGTCTACAGGATCTTTAGGACAGGGGATTTCAGCAGCAGTAGGAATGGCTCTTGCAGGAA
AGCTTGATAAAAAGGATTATAGAGTCTATGCATTACTTGGAGATGGTGAACTAGAAGAAGGACAAGTTTGGGAAGCTTCC
ATGGCGGCTGCACATTATAAACTAGATAATTTAACTGCCTTTGTTGATCATAATGGACTTCAGATTGACGGAAAATGTGA
GGATGTAATGTCGCCGGAACCAGTAAGTAATAAGTTTAGAGCCTTTAATTGGAATGTAATTGATGTAGATGGACATGATT
TTAATGCTTTAATAGCTGCAATTGGTGAAGCTAAAAATATTAAGGGTAAGCCTACAGTAATTGTTTGTAAAACTGTAAAG
GGGAAAGGTGTAAGTTTTATGGAAAATGAAGCATGTTGGCACGGAACGGCACCAAACCAAGAACAATGTAATAAAGCTTT
AAGTGAAATTGGAACTGAATAA

Protein sequence : 
MKNDLRLLKKTAISIREDIITMLTESASGHPGGSLSSVEIMTTLYFKEMNINPENPKDENRDRFVLSKGHAAPALYSTLA
ERGYFNKDELKGLRKFGSILQGHPNMNYVPGVDMSTGSLGQGISAAVGMALAGKLDKKDYRVYALLGDGELEEGQVWEAS
MAAAHYKLDNLTAFVDHNGLQIDGKCEDVMSPEPVSNKFRAFNWNVIDVDGHDFNALIAAIGEAKNIKGKPTVIVCKTVK
GKGVSFMENEACWHGTAPNQEQCNKALSEIGTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96229.1 transketolase Not tested T-PAI Protein 6e-40 42
unnamed AAT96056.1 transketolase Not tested T-PAI Protein 2e-40 42
unnamed AAT96117.1 transketolase Not tested T-PAI Protein 2e-40 42
unnamed AAT96177.1 transketolase Not tested T-PAI Protein 6e-40 42
unnamed AAT96100.1 transketolase Not tested T-PAI Protein 1e-39 41