Gene Information

Name : Clopa_4112 (Clopa_4112)
Accession : YP_007942528.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Unknown
Product : nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4163800 - 4164867 bp
Length : 1068 bp
Strand : -
Note : PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

DNA sequence : 
ATGGATTTATTAACTGAAACATTAGAAAATATAACGCCACTATATGGTGAAAAAGTTATTCTTGCAAAGAAAAGACTTGA
TTCTTTGGCAAAGCCTATTGGAAGTCTTGGTGGACTCGAAGAAATAGCCTGGAGAATGGCTGGAATAACAGGAAAAATTA
AAAATAGTATAAAAAAGAAAAATACAATCATAATGTGTGCTGACAATGGTGTAGTGGAGGAGGGGGTTAGTTCCTGCCCT
AAAAACTTAACAGCTATTGTAACGGAAAATTTTACTAAAGGTTTATCAGGTGTCTGTGTGCTTTCAGCACAGGAAAAAGC
TGATATAACTGTTGTGGATATAGGAGTAGATTATAATTTTAACAACCATGCCATAATTAATAAAAAGATTGCCCATGGAA
CTAAAAATATGAAAAAGGGCCCGGCAATGACTAGAAATCAAGCAATTACAGCTATAGAAACTGGTATAGAAATAGTTGAT
GATTTAGTGAAGAAGGGCTATGATATTTTTGGTACAGGAGAAATGGGAATTGGTAATACTTCTACCAGTGCAGCAGTATT
AAATGTACTTTTAGATATTGATTTACAATATGTTTGTGGAAAGGGCTCCGGTATTACGGATGAAATGCTTGAAAATAAAA
AAAATGTTATAAGAGAATCTATTATACTTAACAGGCCAGATAAAAGTGATGTAATAGATGTATTATCAAAGGTAGGTGGA
TTTGATATTGCTGGACTATGCGGATGCTTTTTAGGCGCAGCTAAAAATAGAGTACCAATTGTTATAGATGGCTTTATAGC
CTCTGTGGCAGCCATTTGTGCATACAGGCTGAATAAAAATGCTAGAGAATTTATGTTTCCATCTCATTTATCAATGGAGC
CTGGAGCAGCACATATAATGAAGGAACTCAATATAAAGCCATTTTTACATATGGAAATGAGGCTTGGTGAAGGTTCAGGA
TGCCCACTGGCTTTTAATATAATAGATGCCTCTTTGGCTATAATGAATAATATGAAGACCTTTCAGGAATTAAAAATGGA
AACAGATTATTTAGTAGATATAAGGTGA

Protein sequence : 
MDLLTETLENITPLYGEKVILAKKRLDSLAKPIGSLGGLEEIAWRMAGITGKIKNSIKKKNTIIMCADNGVVEEGVSSCP
KNLTAIVTENFTKGLSGVCVLSAQEKADITVVDIGVDYNFNNHAIINKKIAHGTKNMKKGPAMTRNQAITAIETGIEIVD
DLVKKGYDIFGTGEMGIGNTSTSAAVLNVLLDIDLQYVCGKGSGITDEMLENKKNVIRESIILNRPDKSDVIDVLSKVGG
FDIAGLCGCFLGAAKNRVPIVIDGFIASVAAICAYRLNKNAREFMFPSHLSMEPGAAHIMKELNIKPFLHMEMRLGEGSG
CPLAFNIIDASLAIMNNMKTFQELKMETDYLVDIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cobT YP_853092.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Not tested PAI IV APEC-O1 Protein 2e-54 41