|
Name : lktB2 (PFLCHA0_c30250) Accession : YP_008000299.1 Strain : Pseudomonas fluorescens CHA0 Genome accession: NC_021237 Putative virulence/resistance : Virulence Product : leukotoxin translocation ATP-binding protein LktB Function : - COG functional category : - COG ID : - EC number : 3.6.3.43 Position : 3360700 - 3362859 bp Length : 2160 bp Strand : + Note : - DNA sequence : ATGACCCGCGCTTTCGATGCCGCTTCTGAACCGTCACCGACAATGCTCGACACCGGCCTGCACGCCCTGGCCTGGGCCGC CCGGCGCTTTGATCTGAGCATCAGCGTGGCGCAACTGACTCACCGCCTGGGACGGGTTGAAGGTCCGGCCGACAGCCTTG ACCTGCGGCGCTGCGCCGGCTGGATCGGCCTGCGCGCACGGGCAGTGCAGAGCCGGGTGCAGCGTTTGCATCACCTGCCG CTGCCGGCGCTGCTGGACACCACTCGGGGCTGGGCGGTGCTGGACGCGGTGGAGGGCGACCGGGTCCGGGTATTCTGGCC GCTGCAGGGGCAATGCCAGACCCTGTCGCGCCAGGAGCTGGCGACGCTCTGGCAAGGCCATGATCAGGGACAGGGAGAGG TGTTGTTGCTGGCCGAGCGGCATGTGCAACTGAAGGCGGGTGGTTTCGGCGTCTCCTGGTTCCTGCCGTCGATCCTCAAG CATGGGCGCCAGTTTCGCAGCGTGCTGCTGGTGTCGCTGATGCTGCAAGGCGTAGCGCTGGTCACGCCGCTGCTGTTCGA GAACATCATCGACCGGGTCCTGGTCAGTCGCGGCCTGTCGAGCCTGCAAGTGCTGGGGATCGCCATGCTGGCCCTGGCGC TGTTCGAGCCCTTGTTCGGCCTGTTGCGGTCCTGGCTGTTCAGCAATGTGGCGAGCAAGATCAACGCCGAGCTGTCCGCG CGCCTGTACCAGCATCTGATCCAGTTGCCGCTGGGTTATTTCCAGCGGCGCCAGAGCGGCGAGATCATCGCCCGGGTCGG TGAGATGCAACAGATCCGCCAGTTTCTTACCGGCTCGGCCTTGACCCTGGTGCTGGACCTGGCGTTCTGCGGGTTGTTCA TCGCCGTGATGTACAGCTACGCACCGCTGCTGACCTGGGTGGTGGTGGGCTCCCTGGCCCTGTATTTCCTCTTCTGGCTG TGCGTGGGCCCCTTGCTGCGCAGCCGGGCCTTGCGCGAATACGAGTTGAATGCGGCCAACACGGCGTTTCTCACCGAGAC CGTGACCGGCATCGAGACTATCAAGACCGGGGCCATCGAAAGCGCCTTCCAGCAGCAGTGGCAGCGCCAGTTGGCGGCTT ATGTGCGTGCGGCGTTCCACACCCGCATCGTCGGGATCTGGGCCGGGCAGGGCATCGGCCTGATCCAGAAGCTGACCGCG GCGCTGTTGCTGTGGTGGGGCGTGATGCTGGTGCTGGATGGCCAGTTGAGCCCCGGCCAACTGGTGGCCTTCAACATGCT GGCCGGGCATGTGGTGGAGCCGATCCTGCGTCTGGCCCAGGTCTGGCAGGACTTCCAGCACACGCTGATTTCCCTGCGCC GCCTGGGGGACATTCTCGACAGCGACTGTGAAAGCGGCAGCGGCGGCCTGGCCTCGGTGCCAGCGTTGCAGGGCGGGGTG AGCTTCCAGGGGGTGCGTTTTCGCTACGAGGAAGACGGCCAGGAGGTGCTGCGCCAGCTGGATCTGGAGATCCAGCCGGG CGAGTTCGTCGGCATCACCGGGCCTTCCGGTTCCGGCAAATCGACCCTGACCCGCCTGTTGCAGCGCCTCTATGTGCCCC AGCACGGCCGGGTGCTGGTGGACGGCATCGACCTGGCCATCGCCGATCCGGTGGCCCTGCGCCGCAACATGAGCGTGGTG CTCCAGGAAAGCGTGCTGTTCGCCGGCAGCGTTGCCGAGAACATCCGCCTGTGCCGGCCTCAAGCCAGCGACGCCGAGGT GCGGCACGCCGCCGGTCTGGCCGGGGCGGCGCCCTTTATCGAGGCCCTGGCCCAGGGCTACGAGACCGAGGTGGGCGAGC GGGGCGGCCAGCTCTCCGGCGGCCAGCGGCAACGCATTGCCCTGGCCCGGGCCCTGTTGACCAACCCCGGCATCCTGTTG CTGGACGAAGCCACCAGTGCCCTGGACTACGAGTCGGAAGCGGCGGTGATGGCCAACCTGCAGGGCATCGTCCGCGGCCG CACGGTGATCAGCGTCGCCCATCGCCTCAATACCCTGCGCCATGCGGACCGGATTCTGGTCATCGATCAGGGCCGGGTGC TCGAACAAGGCACACACCAACAGCTGCTAGCCCTGGACGGGTTGTATGCCCGGCAGTGGGCGCTGCAGATGAAGGACTGA Protein sequence : MTRAFDAASEPSPTMLDTGLHALAWAARRFDLSISVAQLTHRLGRVEGPADSLDLRRCAGWIGLRARAVQSRVQRLHHLP LPALLDTTRGWAVLDAVEGDRVRVFWPLQGQCQTLSRQELATLWQGHDQGQGEVLLLAERHVQLKAGGFGVSWFLPSILK HGRQFRSVLLVSLMLQGVALVTPLLFENIIDRVLVSRGLSSLQVLGIAMLALALFEPLFGLLRSWLFSNVASKINAELSA RLYQHLIQLPLGYFQRRQSGEIIARVGEMQQIRQFLTGSALTLVLDLAFCGLFIAVMYSYAPLLTWVVVGSLALYFLFWL CVGPLLRSRALREYELNAANTAFLTETVTGIETIKTGAIESAFQQQWQRQLAAYVRAAFHTRIVGIWAGQGIGLIQKLTA ALLLWWGVMLVLDGQLSPGQLVAFNMLAGHVVEPILRLAQVWQDFQHTLISLRRLGDILDSDCESGSGGLASVPALQGGV SFQGVRFRYEEDGQEVLRQLDLEIQPGEFVGITGPSGSGKSTLTRLLQRLYVPQHGRVLVDGIDLAIADPVALRRNMSVV LQESVLFAGSVAENIRLCRPQASDAEVRHAAGLAGAAPFIEALAQGYETEVGERGGQLSGGQRQRIALARALLTNPGILL LDEATSALDYESEAAVMANLQGIVRGRTVISVAHRLNTLRHADRILVIDQGRVLEQGTHQQLLALDGLYARQWALQMKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 1e-135 | 46 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 7e-136 | 46 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 7e-136 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lktB2 | YP_008000299.1 | leukotoxin translocation ATP-binding protein LktB | VFG0841 | Protein | 1e-128 | 48 |
| lktB2 | YP_008000299.1 | leukotoxin translocation ATP-binding protein LktB | VFG1269 | Protein | 9e-137 | 46 |
| lktB2 | YP_008000299.1 | leukotoxin translocation ATP-binding protein LktB | VFG1501 | Protein | 4e-136 | 46 |
| lktB2 | YP_008000299.1 | leukotoxin translocation ATP-binding protein LktB | VFG0907 | Protein | 5e-136 | 46 |
| lktB2 | YP_008000299.1 | leukotoxin translocation ATP-binding protein LktB | VFG1557 | Protein | 4e-136 | 46 |
