Gene Information

Name : PFLCHA0_c33420 (PFLCHA0_c33420)
Accession : YP_008000616.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma-70 factor, ECF subfamily
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3744463 - 3744996 bp
Length : 534 bp
Strand : +
Note : -

DNA sequence :

TTGCCCTCCACGCCTCTCGCCAGCCCGGACTCGGTCCACAGCCTTTACGACGCCCATCACCGCTGGCTCTACGAGTTGTT
GCGCCGGCGCCTGAATCACGCCTGGGACGCCGCCGACCTGGCCCACGACATCTTTGTCCGGGTGCTCAAGCGCCCGCCGG
TGCTGCTTGACGAGGTCCACCAGCGTTCCTACCTGGCCACCGTGGCCCGGGGCTTGTGCATCGACCACTGGCGGCGCCGG
CAACTGGAGCAGGCCTGGCTGCAGGCGCTGGCTGCACGCCCGCAGGCGGTGCAACCCTCGGCGGAGCAGCAGGCAATCAT
TGTCGAGACCCTGTACGAAGTGGACGCCATGCTCAGCCGCCTGCCGGCCAAGGTGCGCTCGGCCTTCATCCTCGCTCAAC
TGCACGGCCGGCCCTACCAGGCCATCGCCGATGAGCTGAGGGTATCGGAGCGCATGGTGAAGAAGTACCTGGCCCAGGCC
CTGCTGCATTGCGCGCTGCTGGAGGCCGAACTCGACGGCCTGCTGGTGGACTGA

Protein sequence :

MPSTPLASPDSVHSLYDAHHRWLYELLRRRLNHAWDAADLAHDIFVRVLKRPPVLLDEVHQRSYLATVARGLCIDHWRRR
QLEQAWLQALAARPQAVQPSAEQQAIIVETLYEVDAMLSRLPAKVRSAFILAQLHGRPYQAIADELRVSERMVKKYLAQA
LLHCALLEAELDGLLVD

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	6e-16	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PFLCHA0_c33420	YP_008000616.1	RNA polymerase sigma-70 factor, ECF subfamily	VFG1049	Protein	2e-16	43