|
Name : rpoB (PFLCHA0_c55420) Accession : YP_008002784.1 Strain : Pseudomonas fluorescens CHA0 Genome accession: NC_021237 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 6164531 - 6168604 bp Length : 4074 bp Strand : - Note : - DNA sequence : ATGGCTTACTCATATACTGAGAAAAAACGTATCCGCAAGGACTTTAGCAAGTTGCCGGACGTCATGGATGTGCCGTACCT CCTGGCCATCCAGCTGGATTCGTATCGTGAATTCTTGCAAGCGGGAGCGACTAAAGATCAGTTCCGCGACGTGGGCCTGC ATGCGGCCTTCAAATCCGTTTTCCCGATCATCAGCTACTCCGGCAATGCTGCGTTGGAGTATGTCGGTTATCGCCTGGGC GAACCGGCGTTTGATGTTAAAGAATGCGTGTTGCGTGGTGTAACTTACGCCGTACCTTTGCGGGTAAAAGTCCGTCTGAT CATTTTCGACAAAGAATCGTCGAACAAAGCGATCAAGGACATCAAAGAGCAAGAAGTCTACATGGGTGAAATTCCCCTGA TGACTGAGAACGGTACCTTCGTAATCAACGGTACCGAGCGTGTAATCGTTTCCCAGCTGCACCGCTCCCCTGGCGTATTC TTCGACCACGACCGTGGCAAGACGCACAGCTCCGGTAAGCTGCTGTATTCCGCGCGGATCATTCCTTACCGCGGTTCGTG GCTGGACTTCGAGTTCGACCCGAAAGACTGCGTGTTCGTCCGTATCGACCGTCGTCGCAAGCTGCCGGCATCGGTTCTGC TGCGCGCGCTGGGCTATACCACTGAAGAAGTGCTGGACGCTTTCTACACCACCAACGTATTCCACGTGAAAGGCGAGAGC CTGAGCCTGGAGCTGGTGCCTCAGCGCCTGCGTGGTGAGATTGCCGTTCTGGACATCCAGGATGACAAGGGCAAGGTTAT TGTCGAGCAGGGTCGTCGTATCACCGCTCGTCACATCAACCAGCTGGAAAAAGCCGGTATCAAAGAGCTGGATGTACCTC TGGACTACGTCCTGGGTCGTACCACCGCCAAGGCTATCGTGCACCCGGCTACCGGTGAAATCCTGGCAGAGTGCAACACC GAGCTGAACACCGAGATCCTGGCAAAAATCGCCAAGGCTCAGGTCGTTCGCATCGAGACTCTGTACACCAACGACATCGA CTGCGGTCCGTTCGTCTCTGACACTCTGAAGATCGACTCCACCAGCAACCAATTGGAAGCCCTGGTCGAGATCTATCGCA TGATGCGTCCTGGCGAGCCACCGACCAAAGATGCTGCCGAGACTTTGTTCAACAACCTGTTCTTCAGCCCTGAGCGGTAT GATCTGTCCGCCGTTGGCCGGATGAAGTTCAACCGTCGTATCGGTCGTACCGAGATCGAAGGTTCCGGCGTTCTGTGCAA AGAAGACATCGTTGCCGTACTGAAGACTCTGGTCGACATCCGTAACGGTAAAGGCATTGTCGACGACATCGACCACCTGG GTAACCGTCGTGTTCGCTGTGTTGGCGAAATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTAGAGCGTGCGGTC AAAGAGCGCCTGTCGATGGCTGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAATGCCAAGCCAGTGGCTGCGGCAGT GAAAGAGTTCTTCGGTTCCAGCCAGCTGTCCCAGTTCATGGACCAGAACAACCCGCTGTCCGAGATCACCCACAAGCGCC GTGTTTCTGCACTTGGCCCAGGTGGTCTGACCCGTGAGCGTGCAGGCTTCGAAGTCCGTGACGTACACCCGACCCACTAC GGTCGTGTATGCCCGATTGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCCCTGGCGGCCTATGCGCGCACCAA CCAGTACGGCTTCCTCGAGAGCCCGTACCGTGTGGTGAAAGACGCTCTGGTAACCGACGAGATCGTGTTCCTGTCCGCTA TCGAAGAGGCCGATCACGTTATCGCCCAGGCTTCGGCGACGATGAACGACAAAGGTCAGTTGGTCGATGAGCTGGTAGCT GTTCGTCACTTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCTTGATGGACGTTTCGCCGAAGCAGGTAGTTTC GGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCATTGATGGGTTCCAACATGCAGCGTCAGG CTGTACCGACCCTGCGTGCTGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGTTGCCCGTGACTCCGGCGTTTGC GTCGTGGCTCGTCGTGGCGGTGTGATCGACTCGGTCGATGCCAGCCGTATTGTGGTTCGTGTTGCTGATGACGAAGTTGA AACCGGTGAAGCCGGTGTCGACATCTACAACCTGACCAAGTACACCCGCTCCAACCAGAACACCTGCATCAACCAGCGTC CGCTGGTGAGCAAGGGTGATCGGGTTCAGCGCAGCGACATCATGGCCGATGGTCCGTCCACCGACATGGGTGAGCTGGCA CTGGGTCAGAACATGCGTATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGT GGTTCAGGAAGACCGTTTCACCACGATCCACATCCAGGAACTGACCTGTGTGGCTCGTGACACCAAGCTTGGCCCAGAGG AAATCACTGCAGACATCCCGAACGTGGGTGAGGCTGCACTGAACAAGCTGGACGAAGCCGGTATCGTTTATGTAGGTGCT GAAGTTGGCGCAGGCGACATCCTGGTGGGCAAGGTCACTCCGAAAGGCGAGACCCAGCTGACTCCGGAAGAGAAACTGCT GCGTGCGATCTTCGGTGAAAAAGCCAGCGACGTTAAAGACACTTCCCTGCGTGTGCCTACTGGTACCAAGGGCACTGTTA TCGACGTACAGGTCTTCACTCGCGACGGCGTTGAGCGTGATGCTCGTGCACTGTCGATCGAGAAGAGCCAGCTGGACGAG ATCCGCAAGGACCTGAACGAAGAGTTCCGTATCGTTGAAGGTGCGACCTTCGAACGTCTGCGCTCCGCTCTGGTTGGCCA TAAAGCCGAAGGCGGCGCCGGCCTGAAGAAAGGCCAGGAAATCACCGATGAAGTTCTCGACGGTCTTGAGCATGGCCAGT GGTTCAAACTGCGCATGGCTGAAGATGCTCTGAACGAGCAGCTCGAGAAGGCCCAGGCCTACATCGTTGATCGTCGCCGT CTGCTGGACGACAAGTTCGAAGACAAGAAGCGCAAGCTGCAGCAAGGCGATGACCTGGCTCCTGGCGTGCTGAAAATCGT CAAGGTCTACCTGGCAATCCGTCGTCGCATCCAGCCGGGCGACAAGATGGCCGGTCGTCACGGTAACAAGGGTGTGGTCT CCGTGATCATGCCGGTTGAAGACATGCCGCACGATGCCAATGGCACCCCGGTCGACGTAGTCCTCAACCCGCTGGGCGTA CCTTCGCGTATGAACGTTGGTCAGATCCTCGAAACTCACCTGGGCCTCGCGGCCAAAGGTCTGGGCGAGAAGATCAATCG CATGGTCGAAGAGCAGCGCAAGGTCGCAGAACTGCGTACCTTCCTGGACGAGATCTACAACCAGATCGGCGGTCGCAACG AAGACCTGGACAGCTTCTCCGATCAGGAGATCCTGGATCTGGCGAACAACCTGCGCGGCGGTGTTCCGATGGCCACTCCG GTGTTCGACGGTGCCAAGGAAAGCGAAATCAAGGCCATGCTGAAACTGGCAGACCTGCCAGAAAGCGGCCAGATGCAACT GACCGACGGCCGTACCGGCAACAAGTTCGAGCGTCCAGTTACCGTTGGCTACATGTACATGCTGAAACTGAACCACTTGG TAGACGACAAGATGCACGCTCGTTCTACCGGTTCGTACAGCCTGGTTACCCAGCAGCCGCTGGGTGGTAAGGCGCAGTTC GGTGGTCAGCGTTTCGGGGAGATGGAGGTCTGGGCACTGGAAGCATACGGTGCTGCATACACTCTGCAAGAAATGCTCAC AGTGAAGTCGGACGATGTGAACGGTCGTACCAAGATGTACAAAAACATCGTGGACGGCGATCACCGTATGGAGCCGGGCA TGCCCGAGTCCTTCAACGTGTTGATCAAAGAAATTCGTTCCCTCGGCATCGATATCGATCTGGAAACCGAATAA Protein sequence : MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLG EPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVF FDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGES LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGRTTAKAIVHPATGEILAECNT ELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERY DLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKGQLVDELVA VRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELA LGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGA EVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRR LLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGV PSRMNVGQILETHLGLAAKGLGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLRGGVPMATP VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 74 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 74 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 94 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 74 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 74 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 74 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 74 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 74 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 74 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 72 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 68 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 48 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 46 |
| rpoB | YP_008002784.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
