Gene Information

Name : NH44784_047871 (NH44784_047871)
Accession : YP_008031852.1
Strain : Achromobacter xylosoxidans NH44784-1996
Genome accession: NC_021285
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5088131 - 5088670 bp
Length : 540 bp
Strand : -
Note : -

DNA sequence :

ATGGCCACTCCGGACCTGGATTACCCCGCCCCGATCGCCGTCGACGCCGTTGCCCGCACGCAGTTGCAACGCTTCTATAT
CGACCATCACCCCTGGCTGCTGGGCTGGCTGCGGCGCCGCGTCGGCAACAGCAGCGACGCCGCCGACCTGTCGCACGATA
CCTTCCTGTGCCTGCTGGGCGAGGGCCGGCGCGATGCCATCCGCGAGGCCCGGCCGTTCCTGGCCACCATCGCCCGCCGC
CTGATCGCGCGCCGGCGCCACAAGGCGGCGCTGGAAGCCGCCTACCTCGAAGCCCTGGCCTGCCTGCCGGCCCCGACCGC
GCCATCGCCGGAAAGCGTGGCGTTGGCGGTGGAAACGCTGCAGCAGCTGGACCAGGCACTGGAAGGCCTGCCGCAAGCGG
CGCGCAGCGCCTTCATCATGGCGCACATCGAGGAACTGACCTATGCGCAGATCGCCGAGCGCCTGCGCATCTCGTCCAGC
ACGGTCAAGAAATACCTGATCCGCGCCAACGCCCATTGCCTGTTCGCGCTGGCTGCGTGA

Protein sequence :

MATPDLDYPAPIAVDAVARTQLQRFYIDHHPWLLGWLRRRVGNSSDAADLSHDTFLCLLGEGRRDAIREARPFLATIARR
LIARRRHKAALEAAYLEALACLPAPTAPSPESVALAVETLQQLDQALEGLPQAARSAFIMAHIEELTYAQIAERLRISSS
TVKKYLIRANAHCLFALAA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-20	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
NH44784_047871	YP_008031852.1	RNA polymerase sigma factor	VFG1049	Protein	4e-21	44