Gene Information

Name : BRPE64_CCDS04680 (BRPE64_CCDS04680)
Accession : YP_008039525.1
Strain :
Genome accession: NC_021288
Putative virulence/resistance : Virulence
Product : type VI secretion ATPase ClpV1 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 477014 - 479653 bp
Length : 2640 bp
Strand : -
Note : -

DNA sequence :
ATGCTGCTGGTCGAACTGAAGCCCCTCGTGGGCCGCCTCAACGGCTTCTGCAAACAGGCGCTGGAAGACGGCGTCGGGTT
GTGCGTGTCGCGCGGACATTACGAAATCACGGTCGAGCATGTGCTCGTCAAACTGTTCGACGAGCAGCAGGCCGATATCG
CGCTGCTGTTGCGTCAGCACGATGTCGACGCGGCGCTCGTGCGGCGCGCAATCAATCTCTCGCTGGAACAGATGAAGACC
GGCAACGCGGGACGTCCCGCGTTCTCGCCGCTGCTGCTCGAAATGTTGCAGGACGCGTGGCTGATTGCATCGGTGGATCT
GCAGGAGCCGCGTATCCGTTCGGGCGCGGTGCTGCTCGCGTTCCTCGCGCGTCCGACCTACTACGCCACCGGCGACTATG
CCGCGCCGCTGCGCGCGTTGAATCGTGAAACGCTGATGCGTTCGTTCGATGCCGTCTGCGGCGCCTCCGTCGAGGCAGGC
ACGCGCGACACGCTCGGCGAGAGCACGGGCGATGCGTCCGCGCCCGCGAACGGCGACGGCAGCGCAATTGCACGCTTCTG
CGAAAACTTCACGGAGAAGGCGCGCGCCGGCAAGCTCGATCCGGTGTTCGGCCGCGATGCCGAGATTCGCCAGATGGTCG
ATATCCTCGCGCGCCGCCGCAAGAACAACCCGATCTGCGTCGGCGATCCCGGTGTCGGCAAGACGGCGGTGGTCGAAGGA
CTGGCGCTGCGCGTGGTGGAGGGCGACGTGCCCGATTCGCTCAGGGACGTGACCATCATCGGTCTCGATATGGGCCTGTT
GCAGGCGGGCGCGAGCGTGAAGGGCGAGTTCGAGAATCGCCTCAAGGGCGTGATCACGGAAGTGAAGGCATCGGCGAAAC
CGATCATTCTGTTCATCGACGAAGCGCATACGCTGATCGGCGCAGGCGGTCAGGCGGGCACGTCGGACGCGGCCAATCTG
CTCAAGCCCGCACTCGCGCGCGGCGAGTTGCGCACCATCGCCGCGACGACGTGGGCCGAATACAAGAAGTACTTCGAAAA
AGACGCGGCTCTTGCGCGCCGCTTCCAGCTCGTCAAGCTCGACGAGCCGGATGTCGCGACCGCAACGCTGATCCTGCGCG
GCCTGAAAGAGAAGTACGAGGACGTGCACAAGGTCGTGCTGCGCGATGACGCTATCGTCGCGGCGGCCGAATTGTCGAGC
CGCTACATCATGGGCCGTCAGCTGCCGGACAAGGCGGTCGATCTGCTCGACACCGCCTGCGCGCGCGTGAAGGTGCTGCA
AAGCGCGAAGCCGGACGTGCTGGAAAATACCGAACGCCGCATGCAGGCTTTGCAGCGCGAGAAGAACGGCCTGCAACGCG
ATGCCGATAATCAGCAGCCCGTGGACCTCGAACGTCTCGGCGCGATCGATGGCGAACTCGCGACGCTCACCACGCAGGCC
GACTCGCTGCGCGCGGTGTGGGAGCAGCAGCGCGAAGCCGCGCGCGCCTTGCTCGATGCACGCGCCGCCCGCCATGAAGC
CAAGGCGTCGGGCGCCTCGGACGATACCTTGCAGACGCTCGCGCACAACATCACCTCGGCGAGCGAAGCCTTCAAGGCCG
CGCAGGGCACGCAGCCGCTCGTGCATATCGACGTCGATCCGGATGTGGTCGCGCGCGTGATCTCGGACTGGACCGGCATT
CCGGTCGGCAAGATGCTGCGCGATCAGGCGCAGAGCGTGATGCGCATGGCCGACACGCTGAAGGAGCGCATTCGCGGCCA
GGACCACGCGATGGAGCAGATCGCCGAAGTGCTGAAGACCGCCAAGTCGGGCCTGAAAGACCCTGAGCAGCCGATGGGCG
TGTTCCTGCTCGCGGGACCGTCGGGCGTCGGCAAGACGGAGACGGCGCTGTCGGTCGCGGACATCCTGTTCGGCGACGAG
AAATCGACCACCGTCATCAACATGAGCGAGTTCCAGGAGAAGCACAACGTCAGCCGGCTGATCGGCTCGCCGCCGGGCTA
TGTCGGCTATGGCGAAGGCGGCGTGCTGACCGAGGCGGTGCGGCAGCGTCCGTACTCCGTCGTGCTGCTCGACGAAGTCG
AGAAGGCGCACCTCGACGTGATGAACCTGTTCTATCAGGTGTTCGACAAGGGCATGCTCTCGGACGGCGAGGGCAAGGAG
ATCGACTTCTCGAACACGGTGATCTTCCTCACGTCGAATCTCGCGACCGATGTCATCACCGAAATGACGGCGGGCGAAGA
CAAGCCGGATGCCGCAACCCTGCTCTCCGCAGTGCGCCCGATTCTCTCGAACCACTTCAAGCCCGCGTTGCTCGCGCGCA
TGACGGTGATTCCGTATTTCGCGCTCGCGACCGATGCGCTGGCCGGCATCGTGCGCCTCAAGCTCGACAAGATCGTGCGC
CGCATCGCGCACAACAACAAGATGCGCTTCACCTACAGCGACGCAGTCGTCGCGCAGATCGCCGCGCGCTGCACCGAGGT
CGAGACGGGCGCGCGCAACATCGACTTCATTCTGCGCGGCACGATCTTGCCGATGATGTCGCAGGAAATTCTCACGCGCA
TGGGCGGCGAGACGCCGCTTTCGGGCGTCGAACTCGATGTCGATGAAAGCGGGGAATTCGTCGTGCGCATCGTCGACTGA

Protein sequence :
MLLVELKPLVGRLNGFCKQALEDGVGLCVSRGHYEITVEHVLVKLFDEQQADIALLLRQHDVDAALVRRAINLSLEQMKT
GNAGRPAFSPLLLEMLQDAWLIASVDLQEPRIRSGAVLLAFLARPTYYATGDYAAPLRALNRETLMRSFDAVCGASVEAG
TRDTLGESTGDASAPANGDGSAIARFCENFTEKARAGKLDPVFGRDAEIRQMVDILARRRKNNPICVGDPGVGKTAVVEG
LALRVVEGDVPDSLRDVTIIGLDMGLLQAGASVKGEFENRLKGVITEVKASAKPIILFIDEAHTLIGAGGQAGTSDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQLVKLDEPDVATATLILRGLKEKYEDVHKVVLRDDAIVAAAELSS
RYIMGRQLPDKAVDLLDTACARVKVLQSAKPDVLENTERRMQALQREKNGLQRDADNQQPVDLERLGAIDGELATLTTQA
DSLRAVWEQQREAARALLDARAARHEAKASGASDDTLQTLAHNITSASEAFKAAQGTQPLVHIDVDPDVVARVISDWTGI
PVGKMLRDQAQSVMRMADTLKERIRGQDHAMEQIAEVLKTAKSGLKDPEQPMGVFLLAGPSGVGKTETALSVADILFGDE
KSTTVINMSEFQEKHNVSRLIGSPPGYVGYGEGGVLTEAVRQRPYSVVLLDEVEKAHLDVMNLFYQVFDKGMLSDGEGKE
IDFSNTVIFLTSNLATDVITEMTAGEDKPDAATLLSAVRPILSNHFKPALLARMTVIPYFALATDALAGIVRLKLDKIVR
RIAHNNKMRFTYSDAVVAQIAARCTEVETGARNIDFILRGTILPMMSQEILTRMGGETPLSGVELDVDESGEFVVRIVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-158 44
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-158 44
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 3e-151 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BRPE64_CCDS04680 YP_008039525.1 type VI secretion ATPase ClpV1 family VFG2084 Protein 3e-180 48
BRPE64_CCDS04680 YP_008039525.1 type VI secretion ATPase ClpV1 family VFG2076 Protein 2e-167 46