Gene Information

Name : L483_07625 (L483_07625)
Accession : YP_008093333.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1651122 - 1651622 bp
Length : 501 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

ATGTCGACGCTCGATCCCCAGGCCCTGCACCAGCTGTACAGCGAAAACAACAGCTGGCTGAAGGGCTGGCTGCGCGCCCG
CCTGGGCAACGCCGCCGATGCTTCCGACCTGGCGCACGACACGTTCTTGCGGGTAATGACCGCGCGTAATCCGTTGCCGA
TCCGCGAGCCGCGCAGCTACCTCAGCGCTATAGCCCGCGCGCTGCTGATCGACAAAGCCCGCCGTCGCTCCATCGAAAAA
GCCTACCTGCAAGCCCTGGCCCTGCGCCCGGAGCCGGTTGACGTCTCGCCGGAGGTGCGCTTGTCCATCATAGAAATGCT
GGTGGCCGTGGACAGCCTGCTCGACGAACTCGGCGCCAAGACCCGCGCCATTTTCCTTGCCGTTCAACTTGAAGGCCTGA
CCTACGGTGCTGCGGCTGAGCGTTTCGGCGTGTCGGTTACCACCGTGAAGAACCACCTGATCAAGGCGATGACCCGCTGC
CTGCTGGTAGTTGAAGGCTGA

Protein sequence :

MSTLDPQALHQLYSENNSWLKGWLRARLGNAADASDLAHDTFLRVMTARNPLPIREPRSYLSAIARALLIDKARRRSIEK
AYLQALALRPEPVDVSPEVRLSIIEMLVAVDSLLDELGAKTRAIFLAVQLEGLTYGAAAERFGVSVTTVKNHLIKAMTRC
LLVVEG

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	7e-35	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_07625	YP_008093333.1	RNA polymerase sigma factor	VFG1049	Protein	3e-35	48