Gene Information

Name : L483_10195 (L483_10195)
Accession : YP_008093827.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2193533 - 2194042 bp
Length : 510 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

ATGTCCTGTGCTGACCCTTCCCTGCAAAAAGCCGTGCACACGCTTTACGAGGACCACCATGCCTGGTTGTGCGGGTGGCT
GCGCCGCAAGCTCGGGTGTGTGGAGCATGCGGCCGACCTGGCCCAGGACACGTTCATGCGGGTACTGACCCTGCGCAAGG
CGGCCGAGCTGCAACAGCCACGGGCTTATCTGAGCAGTATTGCCCGCAGCCTGATGATCGACATGTTTCGGCGGCGTGCC
GTGGAGCAGGCCTACCTGGAAACCCTCGCGGCACGGCCTGAGCCTGTAGAAGTTTCGCCGGAGGCGCGCCTGCTGATCAT
CGAGACCCTGCTGGAAATTGATCGGCTACTCGACGGGCTGGGCTCGCGTACCCGCGAGATCTTCCTCATGGCCCAGCTCG
ATGGCTTGAGCTATGTGGAAATTGCGCGGCGCCTGGATGTTTCGCTCACTACTGTCAAAAAGCATGCAGTGCGGGCGCTG
ACCCATTGCCTGATGCTGGCCGAGGCCTGA

Protein sequence :

MSCADPSLQKAVHTLYEDHHAWLCGWLRRKLGCVEHAADLAQDTFMRVLTLRKAAELQQPRAYLSSIARSLMIDMFRRRA
VEQAYLETLAARPEPVEVSPEARLLIIETLLEIDRLLDGLGSRTREIFLMAQLDGLSYVEIARRLDVSLTTVKKHAVRAL
THCLMLAEA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-36	49

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_10195	YP_008093827.1	RNA polymerase sigma factor	VFG1049	Protein	8e-37	49