Gene Information

Name : L483_10225 (L483_10225)
Accession : YP_008093833.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2201856 - 2202386 bp
Length : 531 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

ATGAGCATCCCGGATGTAGCGTTCTCTTCTCAAGTCAGCCAGCTGTACCGGGCCCAGAGCAAATGGTTGCATAACTGGCT
GAAACCGCGGGTGAACTGCAGCCACCTGGCAGCAGACCTGGTCCAGGATGTGTTCGTGCGTGTCATGTCTGCCGCCGACG
CCGCCGTCAAGCTCGCCGCCGTACGCGAACCCAAAGGCTACCTGGCGACCATCGCTCGCCGCCTGATGATCGATCACCTG
CGCCGGGTGCACCTGGAAAGGGCCTGGCTTCAGGTGCTCGCCGAGCAACCCGAAGCACTGGACATCTCACCTGAGCAACG
TTTGGCCTTGCTGCAAACCTTGTTCGAACTCGACGCCATGCTGGCTTCGCTCGGGCCCAAGGTACGTGAAGCATTTCTGC
TTTCGCAGATCGACGGCATGCCCTACAAGCACATCGCCATCCAGCTGGGTGTTTCCGAAGTCAGCGTGCGCCGCTACATT
GCCAAGGCCGCCGAGCACTGCATGATCTACAGCCTTGGCCATGGCCAGTGA

Protein sequence :

MSIPDVAFSSQVSQLYRAQSKWLHNWLKPRVNCSHLAADLVQDVFVRVMSAADAAVKLAAVREPKGYLATIARRLMIDHL
RRVHLERAWLQVLAEQPEALDISPEQRLALLQTLFELDAMLASLGPKVREAFLLSQIDGMPYKHIAIQLGVSEVSVRRYI
AKAAEHCMIYSLGHGQ

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	8e-33	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_10225	YP_008093833.1	RNA polymerase sigma factor	VFG1049	Protein	3e-33	45