Gene Information

Name : L483_11605 (L483_11605)
Accession : YP_008094107.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2505846 - 2506352 bp
Length : 507 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

GTGCCCATCGACGCCCCACTGCAACCCATCGACAGCCTGTATCGCGACCACCACGGCTGGCTGCAAGGCTGGCTGCGCCA
CCGCCTGGGTGATCGCGAGCGGGCGGCGGACATCGCTCAGGACACTTTCCTGCGCCTGCTGGTAACCCGCCGCCTGCCGG
AACAGCGCGACGGCCGTCGATTCCTGGTGCAGATCGCCCGCAATCTGGTCATAGACCAGTGGCGTCGCCAGCGTATCCAC
CAAGCGTATCTGGAGAGCATCGCCGCCCTGCCCGAGCCAGAAACGCCGTCACTGGAAACCCGCGCGATCGTGATCGAAAC
CCTGATGCAGATCGACGCCATGCTCGACAAGATGCCTGCAAAGGTACGCGAGGCATTCCTGCTGTCGCAATTTGAAGGGC
TGACCTACACACAGATCGCAGCGCGGCTGGACGTCAGCGTCAGCTCGGTGCAAAAGTACATGCTCCGCGCCATCACTGCC
TGCTATCAGGTCCTGTACGCTGAATGA

Protein sequence :

MPIDAPLQPIDSLYRDHHGWLQGWLRHRLGDRERAADIAQDTFLRLLVTRRLPEQRDGRRFLVQIARNLVIDQWRRQRIH
QAYLESIAALPEPETPSLETRAIVIETLMQIDAMLDKMPAKVREAFLLSQFEGLTYTQIAARLDVSVSSVQKYMLRAITA
CYQVLYAE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	5e-35	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_11605	YP_008094107.1	RNA polymerase sigma factor	VFG1049	Protein	2e-35	48