Gene Information

Name : L483_01800 (L483_01800)
Accession : YP_008092213.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 391523 - 392041 bp
Length : 519 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

TTGTCTTCTGCACAGAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGTCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTCGGCCGTGACCAGC
TGGATACGCCCCGCGAACCCCGCGCCTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCATTTCCGCCGCGCCGCA
CTGGAACAGGCCTACCTCGCCGAGCTGGCACTGATCCCGGAAGCCGAACACCCCTCACCGGAAGCGCTGCACCTTATCCT
TGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCCCGCGCAGCGTTCCTGCACAACCGCCTGG
ACGGCATGGGCCATGCCGAAATCGCAGAGCGCCTGGGCGTTTCAGTATCACGGGTGCGCCAGTACATCGCCCAAGGCATG
CGCCAGTGCTATGTGGCCCTGTACGGGGAGCCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGRDQLDTPREPRAFLAAVAKGLMFDHFRRAA
LEQAYLAELALIPEAEHPSPEALHLILEDLKAIDRLLGKLSSKARAAFLHNRLDGMGHAEIAERLGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-28	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_01800	YP_008092213.1	RNA polymerase sigma factor	VFG1049	Protein	8e-29	46