Gene Information

Name : L483_22165 (L483_22165)
Accession : YP_008096199.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4625028 - 4625531 bp
Length : 504 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

ATGTCAACGACTGACGGTGCTACCTCAACGGAATTTCACACCCTATATGTCAATCACCATGGTTGGTTGCAAGGGTGGCT
GAGACGCAAGCTGGGCTGCTGCGCCAGCGCCGCAGACCTTACGCAGGACACGTTCGTACGCCTGCTGGCCAAGCATGAAC
CGATACAGATTCGCGATTCGCGCGCCGTTTTGGTGACCGTTGCGCGCAGCGTCTTAAGCAACCACTTCCGCCGGCAGAAG
CTGGAGCGCGCCTACCTTGAAGTGCTTGCCAGCGTCCCTGAGCAATTGATGCCTTCGCTGGAAGAGCAGGCGATCCTGTT
GCAGACCTTGCAGGAACTCGACCGTCTGATGGACGGGCTGGAAGTCCCGGTGCGTCAGGCCTTCCTCTGGTCCCAGCTTG
ACGGCATGGCGCATGCCGAGATTGCCGAGCGGCTCGGCGTATCGGTAACCACCGTCAAGCGCTACATCATCAAGGCCGGT
GTGCAATGTTGCTTCGCCGAATGA

Protein sequence :

MSTTDGATSTEFHTLYVNHHGWLQGWLRRKLGCCASAADLTQDTFVRLLAKHEPIQIRDSRAVLVTVARSVLSNHFRRQK
LERAYLEVLASVPEQLMPSLEEQAILLQTLQELDRLMDGLEVPVRQAFLWSQLDGMAHAEIAERLGVSVTTVKRYIIKAG
VQCCFAE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	7e-36	49

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_22165	YP_008096199.1	RNA polymerase sigma factor	VFG1049	Protein	3e-36	49