Gene Information

Name : L483_25160 (L483_25160)
Accession : YP_008096786.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5321575 - 5322105 bp
Length : 531 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

GTGGTTTCGATCCCAGAGTTGAACACCTCGCTCCATAGCCTGTACCACAGCCACTCACGCTGGTTGCTCGGCTTTCTGTA
TCGCCGGCTGGGCAGCCGCTGCGATGCGGCCGACCTGGTGCAAGACACCTTCGTGCGCATCCTCAAGCGCCCACGGCAGT
TCGACGGCGAACGTGGCGAACGCTCGTACCTGGCCACCATCGCCCGCGGCCTGTGCGTGGACCACTGGCGCCGGCAGAAG
CTGGAACAAGCCTGGTTGCAGCAGTTGGCCTTGCAGCCCGAGGCCCTGCAGCCCTCCCCTGAACAGCGCGCGATCATTGT
CGAGACCCTGCACGAGGTGGACGCAATGTTGCAGCGTTTGCCGGGCAAAGTGCGCCAGGCATTCCTGCTGGCGCAGATCG
ATGGCCTGGCCTACCGCGATATTGCCGCGCACGTCGGGGTAAGCGAACGCATGATCAAAAAGTACCTGGCCCAGGCGTTT
GTGCATTGCGCGATTCTTGAAGCCGAACTCGACGGCTTGCTGGTGGAGTGA

Protein sequence :

MVSIPELNTSLHSLYHSHSRWLLGFLYRRLGSRCDAADLVQDTFVRILKRPRQFDGERGERSYLATIARGLCVDHWRRQK
LEQAWLQQLALQPEALQPSPEQRAIIVETLHEVDAMLQRLPGKVRQAFLLAQIDGLAYRDIAAHVGVSERMIKKYLAQAF
VHCAILEAELDGLLVE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-21	49

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_25160	YP_008096786.1	RNA polymerase sigma factor	VFG1049	Protein	6e-22	49