Gene Information

Name : L483_27400 (L483_27400)
Accession : YP_008097225.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5806959 - 5807453 bp
Length : 495 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

GTGCCCAGCGCGCTCTCTTCCACGGTCGAAGGCCTTTACCACGCCCATCACAACTGGCTCACCAGCTGGTTGCGCCGCCG
CCTGGGCTGCCCGCAGAGTGCCGCCGACCTGGCCCAGGACACCTACCTGCGCCTGCTGCAGGCCCGCGAAACACCGCAAC
TGATCGAACCTCGCGCATTTCTCGCCACCGTGGCCAAGCGTGTGTTGTGCAACCACTTCCGCCGCCAGGAGCTGGAGCGC
GCTTACTTGCAGGCCCTGGCCCAAATACCGGAAGAAGTGGCACCCAGTGAGGAGCAGAAGGCGATCATCTTCGAGACCCT
GCTGGAACTCGACCGCCTGCTGGACGGCCTGCCTCCATTGGTCAAACGTGCCTTCCTGTTGGCCCAGGTCGACGGCCTTG
GCCAAGGCGAAATCGCCCGTGAGCTGGGCATTTCCCTGGCCACGGTAAAACGCTACCTGAGCAAGGCAGCCATGCGCTGT
TACTTTGCCCTGTGA

Protein sequence :

MPSALSSTVEGLYHAHHNWLTSWLRRRLGCPQSAADLAQDTYLRLLQARETPQLIEPRAFLATVAKRVLCNHFRRQELER
AYLQALAQIPEEVAPSEEQKAIIFETLLELDRLLDGLPPLVKRAFLLAQVDGLGQGEIARELGISLATVKRYLSKAAMRC
YFAL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-30	50

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_27400	YP_008097225.1	RNA polymerase sigma factor	VFG1049	Protein	1e-30	50