Gene Information

Name : L483_03590 (L483_03590)
Accession : YP_008092548.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 765275 - 765790 bp
Length : 516 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

ATGCAGATCAACGACACGTTCAAGCCGACCGAGGTCGCTCTGCTCTATCAGGCCCACCATAGCTGGCTTCGCGGCTGGTT
GCGCAACCGGGTGGGGTGCAGCGAGCATGCGGCCGACCTGGCCCAGGACACCTTCGTGCGGCTATTGCGGGCCCGCCAGG
TTTCGCCGCTTAAAGAGCCACGCGCCTATCTCAGCAGCATCGCCCGTGGCCTGATGATCGACCAGTTCCGCCGTCGCGCA
CTGGAACACGCCTACCAGCAAAGTCTGGCCCACCTGCCCGAAGCCGAGGCACCCAGCGAAGAGCACCGGCTGGTCATTCT
CGATGCCCTGGACCGCCTCGACCGTGCCCTGAACCAGCTCAAGCCGCGTGTTCGCCAGGCGTTTCTGCTGGCTCAACTGG
ACGGCTTGAGCATCGTGCAGATCGCCCAGCAGCTGGAAGTGTCGCGGGCCACCGTCGAGCGGGACCTGGCCAAAGCCTTG
GGTGTCTGCTACCGGTTGCGTTACGCCGATGCATGA

Protein sequence :

MQINDTFKPTEVALLYQAHHSWLRGWLRNRVGCSEHAADLAQDTFVRLLRARQVSPLKEPRAYLSSIARGLMIDQFRRRA
LEHAYQQSLAHLPEAEAPSEEHRLVILDALDRLDRALNQLKPRVRQAFLLAQLDGLSIVQIAQQLEVSRATVERDLAKAL
GVCYRLRYADA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-29	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_03590	YP_008092548.1	RNA polymerase sigma factor	VFG1049	Protein	1e-29	45