Gene Information

Name : L483_00485 (L483_00485)
Accession : YP_008091953.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 97963 - 98466 bp
Length : 504 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :

ATGCCCAGCAATGACTCCGTGCAAACGCTCTACAGTGACCACCACGGTTGGTTACACGCCTGGCTACGCAGCAAGCTGGG
CAATGCCGCCGATGCCGCAGACCTGGCCCATGACACCTTCGTCCGCTTGCTGCAACGCCGCGAACACCTGCAGCTAAACA
CCCCTAGGGCCTTCTTGCGCACGGTAGCCCGTGGGCTGATCATCGATCACTGGCGCCGCGAGGAGCTGCACCGGGCCTAC
CTGGAGGCATTGGCCCATGTGCCGGAAGCACAGTCTCCATCAGCCGAAACCCGCGAGCTGCTGCTGGAGTTGCTTGAACG
TATTGCGCGCATGCTCGACGGCCTCAAACCCAAGGTACGTCGCGCCTTCCTCCTGGCCCAATGCGAGGGGCTGAAGCATC
AGGCCATTGCCGAGCAGATGGGGATCTCAGTGCGTACGGTGGAGCGTTACATCGCTGATGCGCTCTACCATTGCTATGTG
CTGCGCTATGAAGACGAGTGTTGA

Protein sequence :

MPSNDSVQTLYSDHHGWLHAWLRSKLGNAADAADLAHDTFVRLLQRREHLQLNTPRAFLRTVARGLIIDHWRREELHRAY
LEALAHVPEAQSPSAETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYV
LRYEDEC

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	6e-31	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
L483_00485	YP_008091953.1	RNA polymerase sigma factor	VFG1049	Protein	2e-31	46