Gene Information

Name : PCA10_06400 (PCA10_06400)
Accession : YP_008100977.1
Strain : Pseudomonas resinovorans NBRC 106553
Genome accession: NC_021499
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 707789 - 708289 bp
Length : 501 bp
Strand : -
Note : -

DNA sequence : 
ATGTCCTCTCCCCCCATCACCCTCCAGGCGCTGTACAGCGAGCACCACGGCTGGCTGAAGAACTGGCTGCGCAGCAGGCT
GGGCAATGCCGCCGATGCCGCGGACCTGGCCCAGGACACCTTCCTGCGCCTGCTGGGCAAGGGCGACAGCTTCGAGCTGC
ACACCCCGCGTGCCTTCCTGCGCACCGTGGCGCGCGGCCTGGTGATCGACCACTGGCGGCGCGAGGAACTGGAGCGCGCC
TACCTGGAAGCCCTGGCGCACCTGCCCGAGGCCCAGGCGCCCTCCCCCGAGGAACGCGAGCTGATCCTCGAGCTGCTGGA
ACGTATCGCGCTGCTGCTCGACCGCCTCAAGCCCAAGGCGCGCACCGCCTTCCTCCTTGCCCAGTGCGAGGGCCTCACCC
ACAAGGAAGTCGCCGCGCGCCTGGGCATCTCCCTGCGTTCGGTGGAACGCTACGTGGCCGACGCCCTGTACCACTGCTAC
CTGCTGCGGTTCGAGGAATGA

Protein sequence : 
MSSPPITLQALYSEHHGWLKNWLRSRLGNAADAADLAQDTFLRLLGKGDSFELHTPRAFLRTVARGLVIDHWRREELERA
YLEALAHLPEAQAPSPEERELILELLERIALLLDRLKPKARTAFLLAQCEGLTHKEVAARLGISLRSVERYVADALYHCY
LLRFEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-23 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCA10_06400 YP_008100977.1 putative RNA polymerase ECF-type sigma factor VFG1049 Protein 5e-24 50