Gene Information

Name : PP4_11890 (PP4_11890)
Accession : YP_008112226.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1367186 - 1367794 bp
Length : 609 bp
Strand : -
Note : -

DNA sequence :

TTGCAGTATTCTCTCGGCGCCCCTACTATTGCGATCATTTCTCATTCGCACCATTATGCGCTCGCGCCGGATGCCGCCGT
GGTTTCGATCCCAGAGCTGAACACCTCGCTCCATACCCTGTACCACAGCCACTCGCGCTGGTTGCTCGGCTTTCTGTACC
GCCGCCTGGGCAGCCGCTGCGATGCCGCGGACCTTGTGCAGGACACCTTCGTGCGCATCCTCAACCGCCCAAGGCAGTTC
GACGGTGCACGCGGCGAGCGCTCGTACCTGGCGACCATTGCCCGCGGCCTGTGCGTGGACCACTGGCGCCGGCAAAAGCT
TGAACAGGCCTGGTTGCAGCAATTGGCCTTGCAGCCCGAGGCACTGCAGCCCTCCCCCGAACAGCGCGCGATCATTGTCG
AGACCCTGCACGAGGTGGACGCCATGCTGCTGCGTTTGCCGAGCAAGGTGCGCCAGGCATTCCTGCTGGCGCAGATCGAT
GGCCTGGCCTACCCCGATATCGCCGCGCACATTGGCGTGAGCGAACGCATGATCAAGAAATACCTGGCCCAGGCGTTTCT
GCATTGCGCCATTCTTGAAGCCGAACTCGACGGCTTGCTGGTGGAGTGA

Protein sequence :

MQYSLGAPTIAIISHSHHYALAPDAAVVSIPELNTSLHTLYHSHSRWLLGFLYRRLGSRCDAADLVQDTFVRILNRPRQF
DGARGERSYLATIARGLCVDHWRRQKLEQAWLQQLALQPEALQPSPEQRAIIVETLHEVDAMLLRLPSKVRQAFLLAQID
GLAYPDIAAHIGVSERMIKKYLAQAFLHCAILEAELDGLLVE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-20	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PP4_11890	YP_008112226.1	putative RNA polymerase ECF-type sigma factor	VFG1049	Protein	4e-21	47