Gene Information

Name : PP4_12520 (PP4_12520)
Accession : YP_008112289.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1467375 - 1467893 bp
Length : 519 bp
Strand : +
Note : -

DNA sequence :

GTGTACAAGGTCCCGCCTGCACCGCACGATGACATGCACTGCCTGTACCGCGACCACAGCGGCTGGCTGCAAGGCTGGCT
GCGCCGGCGCCTGGGCGACCGGGAGCGGGCGGCGGACCTGACCCAGGACACCTTCGTGCGCCTGATCGCCAGCACAGTGG
CCCACCCGTTGCGTGAGCCACGCAATTTTCTGGCGACGGTGGCCAAGCGGGTGATGGTCGACCATTTGCGCAGGCGCTCG
CTGGAGCAGGCCTACCTGGAGGCGTTGGCACTGGAGCCGGAGTTGCTGGAGGTGTCTGCCGAGCAACGGGTGATCCTGCT
GGAAACCTTGTTGCAGCTCGATGCCATGCTGGACGGCCTGAACCACAAGGTGCGCCAGGCGCTGTTTCTGTCGCACCTCG
AAGGCTTGAGCTATGCCGAAATCGGCGAGCGCCTGGGGGTGTCTGTAAGTTCGGTGACCAAATACATCGCCAAGGCCACC
GAACGGTGCCTGCTGTTCGCGCTGGATGCCGAGCTGTGA

Protein sequence :

MYKVPPAPHDDMHCLYRDHSGWLQGWLRRRLGDRERAADLTQDTFVRLIASTVAHPLREPRNFLATVAKRVMVDHLRRRS
LEQAYLEALALEPELLEVSAEQRVILLETLLQLDAMLDGLNHKVRQALFLSHLEGLSYAEIGERLGVSVSSVTKYIAKAT
ERCLLFALDAEL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-32	53

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PP4_12520	YP_008112289.1	putative RNA polymerase ECF-type sigma factor	VFG1049	Protein	7e-33	53