Gene Information

Name : PP4_01560 (PP4_01560)
Accession : YP_008111193.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 178548 - 179051 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
ATGCCCAGCAACGACTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTACACGCCTGGCTGCGCAGCAAGCTGGG
CAATGCCGCCGATGCCGCAGACCTGGCCCACGACACCTTCGTCCGCTTGCTGCAACGCCGCGAACACCTGCAGCTGAATA
CCCCTCGGGCGTTCCTGCGCACGGTAGCGCGTGGGCTGGTCATCGATCACTGGCGCCGCGAGGAACTGCACAGGGCCTAC
CTGGAGGCACTGGCCCGTGTGCCGGAAGCACAGTATCCCTCGGCCGAAACCCGCGAGCTGCTGCTGGAATTGCTTGAGCG
TATTGCGCGCATGCTCGACGGCCTCAAACCCAAGGTACGTCGCGCCTTCCTGCTGGCCCAATGCGAGGGGCTGAAGCACC
AGGCCATTGCCGAGCAGATGGGGATCTCGGTGCGTACCGTGGAGCGTTACATCGCCGATGCGCTCTTCCATTGCTATGTG
CTGCGCTATGAAGATGAGTGTTGA

Protein sequence : 
MPSNDSVQTLYSDHHGWLHAWLRSKLGNAADAADLAHDTFVRLLQRREHLQLNTPRAFLRTVARGLVIDHWRREELHRAY
LEALARVPEAQYPSAETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALFHCYV
LRYEDEC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 6e-30 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_01560 YP_008111193.1 putative RNA polymerase ECF-type sigma factor VFG1049 Protein 3e-30 46