Gene Information

Name : PP4_24400 (PP4_24400)
Accession : YP_008113477.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2776194 - 2776703 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
ATGCCGCCCGCCGACCCTACCCTCAACCTGCAGGTCCAGACGCTGTACACCGAGCACCATGGCTGGCTGCAGGGCTGGCT
GGGGCGCAAGCTGGGCAATGCCTGCGATGCAGCCGACCTGGCTCACGACACGTTCGTGCGCCTGCTCAGCCGCCAGGGCA
ATAGCTATTTCGGCAGTGAACCCCGGGCCTTGCTTACCCACATCGCCAAGGGCCTGGTGGTCGACCGCTGGCGCCGGCAG
GATGTCGAGCGCGCCTATCTGGAAGCCATTGCCCACTTGCCGCAACCCGAGGTGCCCGCGCCGGAAACACGCTGGCTGAT
CCTGGAAACCCTGTGCCGCGTCGATGCCATGCTGCGCGACATGCCGGCTCGGGTCCGCCAAGTGTTCCTGCTGTCGCAGC
TGGACGGGCTGACCTATGCGCAAATCGCCGAGCAGTTGCAGCTGTCTCTGATTACCATCAAGCGTGACATGCGCACGGCC
TTCCTTGCCTGCCTGAGCATTGACGGATGA

Protein sequence : 
MPPADPTLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNSYFGSEPRALLTHIAKGLVVDRWRRQ
DVERAYLEAIAHLPQPEVPAPETRWLILETLCRVDAMLRDMPARVRQVFLLSQLDGLTYAQIAEQLQLSLITIKRDMRTA
FLACLSIDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-29 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_24400 YP_008113477.1 putative RNA polymerase ECF-type sigma factor VFG1049 Protein 6e-30 46