Gene Information

Name : PP4_24540 (PP4_24540)
Accession : YP_008113491.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2797182 - 2798684 bp
Length : 1503 bp
Strand : -
Note : -

DNA sequence :
ATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGAACTGGTCGAAGTAGAAAACTTCGCGCCACAGCCCTCACTGCT
GGACAGCATCATTTCGCAAAGCCGCGTGGCCCGTTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAATTGG
TGAACCAGGTGCTCGAAGGTGAGATGACGCCGAGCAAAGACCTGATCGCCGTGCTCGACTCGCGTATCGCCGAGATCGAT
TCGATGCTCTCCGAGCAGATGAACGAGATCATGCACGCCCGCGAGTTCCAGCAGCTGGAAGCCTCCTGGCGCGGCCTGAA
ATACCAGGTAGACCAGACCGAAACCAGCACCACGCTGAAGATCCACCTGCTCAACGCCTCGAAGAAGGACCTGGTACGTG
ACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCGCTGTTCAAGAAAGTCTACGAAGAAGAATACGGCACTTTCGGTGGC
GCGCCGTTCGGTATGCTGATCGGTGACTACGAGTTCAACCGCAACCCCGAAGACATGTACTTGCTGGAAGAGATCTCGCA
CGTGGCAGCGTCGGCGCATGCACCGTTCATCTCCGCCGCCTCCCCCGAGCTGTTTGGCTGGGACTCGTTCACCGAGATGT
CCGGCCCGCGTGACTTGGCAAATCTCTTCGACACCGTCGAATACGCCAAGTGGAAGTCGTTCCGCGCCTCGGAAGACTCA
CGCTACGTCGGCCTCACCCTGCCCCACGTGCTCGGCCGCCTGCCATATGGCCCTGATACCACGCCGGTGGAAGAATTCAA
CTTCGTCGAAAGCGTCGACGGCCGCGACCACAACAAGTACCTGTGGATGAACGCCGCCTATGCCCTCGGCACCCGCGTCA
CCGATGCTTTCGCCCGCTACGGCTGGTGCGTGGCCATCCGCGGCGTAGAAGGTGGCGGCCTGGTCGAAGGCTTGCCAACC
CATACCTTCAAGACCGACGACGGCGAAATCGCCCTCAAGTGCCCGACCGAGATCGCCATCACCGACCGCCGCGAAAAAGA
GCTGTCGGACCTGGGCTTCATTCCCCTGGTGCACTGCAAGGGCACCGACTATGCCGCGTTCTTCGGCACCCAGTCGGCGC
AGAAGCAAAAGCAATACAACACCGACATCGCCAACGCCAACGCACGCCTGTCGGCCCAGCTGCAGTACATCTTCGCCACG
TCGCGCATCGCCCATTACATGAAGGCAATCATGCGCGACAAAATCGGCAGCTTCGCCTCGCGCATGGACGTGGAGCGCTT
CCTCAACCAGTGGCTGGCCAGCTACGTGCTGCTGGACGACACCGCCAGCCAGGAGGCCAAGGCCAAGTTCCCGCTGCGCG
AAGCCCGCGCCGAGGTGTTCGAGGTACCAGGCAAGCCAGGCGTGTACAAGGCTGTAACCTACCTGCGCCCGCACTACCAG
CTCGACGAACTGACCGCCTCGCTGCGCCTGGTCGCCGAACTGCCTCAAGGGGCGCGCGGCTGA

Protein sequence :
MTDKQTAPQQAGELVEVENFAPQPSLLDSIISQSRVARSDTERNRTRDLIGELVNQVLEGEMTPSKDLIAVLDSRIAEID
SMLSEQMNEIMHAREFQQLEASWRGLKYQVDQTETSTTLKIHLLNASKKDLVRDLKAASEFDQSALFKKVYEEEYGTFGG
APFGMLIGDYEFNRNPEDMYLLEEISHVAASAHAPFISAASPELFGWDSFTEMSGPRDLANLFDTVEYAKWKSFRASEDS
RYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFARYGWCVAIRGVEGGGLVEGLPT
HTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSAQKQKQYNTDIANANARLSAQLQYIFAT
SRIAHYMKAIMRDKIGSFASRMDVERFLNQWLASYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQ
LDELTASLRLVAELPQGARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 4e-87 41
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 3e-87 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP4_24540 YP_008113491.1 hypothetical protein VFG2070 Protein 8e-109 51
PP4_24540 YP_008113491.1 hypothetical protein VFG2475 Protein 9e-90 42
PP4_24540 YP_008113491.1 hypothetical protein VFG2093 Protein 2e-88 42