Gene Information

Name : PP4_33800 (PP4_33800)
Accession : YP_008114417.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3843974 - 3844480 bp
Length : 507 bp
Strand : +
Note : -

DNA sequence :

TTGGACAGCACATCGACCCGTAAACTGGGCTTTTTCTTCAGCGACCACCATCGCTGGTTGCTCCAGCACATCCAGAAACG
CCTGCGCAACCACGCCGACGCAGAGGACACTGCCGCCGAAACGTTCTGCCAGATGCTCGGCGCACGTGTCGACCCAGACA
GCATTCAGCAGCCTCGCGCCTACCTCACTGTCATCGCCCGTCGGCTGATCTTTGACCGCCATCGCCGTCGCCAGCTCGAG
CAGGCCTACCTGGAACACCTGGCGCGGTTGCCTGAGGCCGTCGCACCATCGGCCGAGGAGCAACTGCTGCTGATCGAGGC
CCTGGTGAGCATCGATGAGGCACTGGACGGCTTGCCGGCAGTCGTCAAAGCCACCTTCCTCTACAGCCAGCTCGACGGCA
TGCACTACGCCGACATCGCGGCAAAGCTGCAGATCAGCGAACGCTCTGTCAGCCGCTACATGAAACAGGCGCTGCGCCAA
TGTTACCTGTGCGAGGTGCAGGCATGA

Protein sequence :

MDSTSTRKLGFFFSDHHRWLLQHIQKRLRNHADAEDTAAETFCQMLGARVDPDSIQQPRAYLTVIARRLIFDRHRRRQLE
QAYLEHLARLPEAVAPSAEEQLLLIEALVSIDEALDGLPAVVKATFLYSQLDGMHYADIAAKLQISERSVSRYMKQALRQ
CYLCEVQA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-24	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PP4_33800	YP_008114417.1	putative RNA polymerase ECF-type sigma factor	VFG1049	Protein	4e-25	41