Gene Information

Name : PP4_03830 (PP4_03830)
Accession : YP_008111420.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 453118 - 453636 bp
Length : 519 bp
Strand : -
Note : -

DNA sequence :

TTGTCTTCAGCACAGAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGCCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTCGGCCGTGAGCAGC
TGGACACGCCCCGCGAACCCCGTGCGTTTCTGGCCGCCGTGGCCAAAGGGCTGATGTTCGACCACTTTCGCCGCGCCGCG
CTGGAACAGGCCTATTTGGCCGAGCTGGCGCTGATCCCGGAAGCCGAACAACCTTCCCCGGAAGTGCAGCTGCTGATCCT
CGAAGACCTCAAGGCCATCGACCGGCTGCTCGGCAAGCTGTCGAGCAAGGCCCGGGCGGCATTCCTGCACAACCGCCTGG
ACGGCATGGGCCATGGCGAAATCGCCGAGCGCCTGGGTGTGTCGGTGTCGCGGGTGCGCCAGTACATCGCCCAAGGCATG
CGCCAGTGCTATGTGGCCCTGTACGGGGAACCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGLMFDHFRRAA
LEQAYLAELALIPEAEQPSPEVQLLILEDLKAIDRLLGKLSSKARAAFLHNRLDGMGHGEIAERLGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-28	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PP4_03830	YP_008111420.1	putative RNA polymerase ECF-type sigma factor	VFG1049	Protein	1e-28	47