Gene Information

Name : PP4_45700 (PP4_45700)
Accession : YP_008115607.1
Strain : Pseudomonas putida NBRC 14164
Genome accession: NC_021505
Putative virulence/resistance : Virulence
Product : putative RNA polymerase ECF-type sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5185467 - 5185982 bp
Length : 516 bp
Strand : +
Note : -

DNA sequence :

ATGCAGATCAACGACACGCTCAAGCCGACCGAGGTCGCTCTGCTCTACCAGGCCCACCATAGCTGGCTGCGCGGCTGGTT
GCGCAACCGGGTAGGTTGCAGCGAGCATGCCGCCGACCTGGCCCAGGATACCTTCGTGCGGCTGCTGCGGGCCCGCCAGG
CTTCACCACTGAAAGAGCCACGCGCCTATCTCAGCAGCATCGCCCGTGGCCTGATGATCGACCAGTTCCGCCGTCGTGCA
CTGGAACACGCCTACCAGCAAAGCCTGGCCCACCTGCCCGAAGCCGAGGTACCGAGCGAAGAACACCGCCTGGTCATTCT
CGATGCCCTGCACCGCCTCGACCGTGCCCTGCACCAGCTCAAGCCGCGTGTTCGCCAGGCGTTTCTGCTGGCGCAACTGG
ACGGCTTGAGCATCGTTCAGATCGCCCAGCAGCTGGAGGTATCCCGGGCCACCGTGGAGCGCGACCTGGCCAAAGCCTTG
GGCGCCTGCTACCGGTTGCGTTATGCCGATGCATGA

Protein sequence :

MQINDTLKPTEVALLYQAHHSWLRGWLRNRVGCSEHAADLAQDTFVRLLRARQASPLKEPRAYLSSIARGLMIDQFRRRA
LEHAYQQSLAHLPEAEVPSEEHRLVILDALHRLDRALHQLKPRVRQAFLLAQLDGLSIVQIAQQLEVSRATVERDLAKAL
GACYRLRYADA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-32	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PP4_45700	YP_008115607.1	putative RNA polymerase ECF-type sigma factor	VFG1049	Protein	4e-33	44