|
Name : rpoB (K756_10340) Accession : YP_008124725.1 Strain : Haemophilus parasuis ZJ0906 Genome accession: NC_021521 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 1970739 - 1974767 bp Length : 4029 bp Strand : - Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit DNA sequence : ATGGCATACTCATATTCCGAGAAAAAGCGTATTCGTAAGAGCTTTGGCAAACGCTCACAAGTTCTGAACGTACCTTATCT ATTAACAATTCAGCTCGATTCTTTTGATAAATTTATCCAAAGAGATCCTGAAGGACTTCAAGGTTTAGAAGCGGCATTCC GTTCAGTGTTTCCGATTGTGAGCAGCAACGGTGCAACTGAATTACAATACGTTTCTTACGAATTAGGCGAACCCGTATTT GATGTGCGTGAATGCCAAATTCGTGGTACAACCTATGCAGCGCCTTTACGCGTAAAACTTCGTCTTGTGACCTTTGATCG CGAAGCGGCAGCAGGCACAGTAAAAGACATCAAAGAACAAAACGTCTATATGGGCGAAATCCCATTGATGACCGACAACG GTACTTTCGTGATCAACGGTACTGAGCGTGTTATCGTTTCTCAGTTACACCGTAGTCCAGGCGTATTCTTCGATTCTGAC AAAGGTAAAACCCACGCTTCAGGTAAAGTGCTTTATAACGCACGCATCATTCCTTACCGTGGTTCTTGGTTAGATTTCGA GTTCGATCCGAAAGACAACCTTTATGCACGTATCGACCGTCGCCGTAAATTACCGGCAACAATCATTCTGCGTGCATTAG GCTACACCACCGAAGAAATCTTAAATATGTTCTTCGAAACTGCGACTTTCCACATTGAAGACAACAGATTATTGATGACC TTAGTACCTGAGCGTCTTCGTGGTGAAACCGCAGCTTTCGACATTGAAGCAAACGGCAAAATCTATGTTGAAAGTGGTCG TCGTATTACCGCTCGTCACATTCGTGCATTAGAAAAAGACAATATTACTCAAATCCAAGTGCCGACCGAGTATATCGTAG GTCGTGTGACAGCGAGAGATTACGTTGATCTTTCAACAGGTGAAATTGTTTGCCCAGCAAACAGCGAGATCGGTTTAGAA ACCCTTGCAGCATTAGCACAAGCAGGTTACAACGAGATCGAAGTATTATTTACTAACGATCTTGATTACGGTCCGTACAT TTCTGAAACCTTGCGTATCGATCCAACTTACGACCGTTTAAGTGCGTTAGTGGAAATCTATCGTATGATGCGTCCAGGTG AGCCACCAACAAAAGAAGCGGCTGAAGCATTATTTGACAATATGTTCTTCTCAACCGACCGCTATGATCTTTCTGCGGTA GGTCGTATGAAGTTCAACCGTTCTTTAGATATTCCTGAAGGCGTAGGCACAGGTATCTTAAGCAACGACGACATCATCGG TGTAATGAAGAAATTGATCGAAATCCGTAACGGTCGTGGTGAAGTCGATGATATTGACCACTTAGGTAACCGTCGTATCC GCTCAGTGGGCGAGATGGCGGAAAACCAATTCCGTATCGGTTTAGTGCGTGTTGAACGTGCGGTGCGTGAGCGTCTTTCA TTAGGCGATTTAGATGGCGTGACCCCACAAGATTTAATCAATGCGAAACCAATTTCTGCGGCAGTGAAAGAGTTCTTCGG TTCATCACAACTTTCGCAATTTATGGACCAAAACAACCCGCTTTCAGAAGTCACCCACAAACGTCGTATTTCAGCGTTAG GTTCGGGCGGTTTAACTCGTGAACGTGCAGGCTTTGAAGTGCGTGACGTACACACCACTCACTATGGTCGCTTATGTCCG ATTGAAACCCCAGAGGGTCCAAACATCGGTTTGATTAACTCGCTTTCTGTATATGCACGTACCAACAACTACGGCTTCTT AGAAACCCCATTCCGTAAAGTCGTGAATGGTCAAGTGACTGAAGAGATCGAATACTTATCAGCGATTGAAGAAGGTGCTT ACGTTATCGCACAGGCGAACTCAAACTTAGATGAGAACTTCCGCTTTACCGATACTTATGTGACCTGTCGTGGTGAACAC GGTGAGTCTGGTTTATATCGCCCAGAAGAAATTCACTATATGGACGTTTCAACGCAACAAGTGGTTTCTGTGGCGGCAGC ATTAATTCCATTCCTTGAACACGACGATGCGAACCGTGCGTTAATGGGTGCAAACATGCAACGTCAAGCAGTTCCAACAT TGCGTGCGGACAAACCATTAGTCGGTACAGGTATGGAAAAACCAATCGCCCTTGACTCTGGTGTTGCGGTGATTGCAAAA CGTGGTGGTACTATCCAGTACGTTGATGCTTCTCGTATCGTAGTAAAAGTCAATGAAGATGAAACCGTTGCAGGTGAAGC AGGTATTGATATTTATAACTTAATCAAATATACCCGTTCAAACCAAAACACTTGTATCAACCAAATTCCTTGTGTGAAAT TAGGTGAGCCGGTTGGTCGTGGTGAAATCTTAGCTGATGGTCCTTCAACAGATTTAGGTGAGTTGGCGTTAGGTCAAAAT ATCCGTGTGGCATTTATGCCTTGGAACGGCTATAACTTCGAAGACTCAATGTTAGTCTCTGAGCGTGTAGTACAAGAAGA CCGCTTTACTACAATCCACATTCAAGAGTTATCTTGTGTGGCTCGTGATACCAAACTTGGTGCAGAAGAGATCACGGCAG ATATTCCAAACGTGGGTGAGTCAGCATTAAGCAAACTGGACGAATCAGGTATCGTGTATATCGGTGCTGAAGTGAAAGGT GGCGATATTCTTGTGGGTAAAGTGACACCAAAAGGTGAAACCCAATTAATCCCGGAAGAAAAATTACTCCGTGCGATCTT CGGTGAAAAAGCATCAGATGTTAAAGATAGTTCGCTTCGTGTACCAAACGGCACATCAGGTACCGTTATCGACGTTCAAG TCTTTACCCGTGATGGCGTAGAAAAAGACAAACGTGCGAAAGACATTGAAGAAATTCAATTACGTGAAGCGAAAAAAGAC TTAACCGAAGAGTTAGAGATCTTAGAAGCAGGCTTGTTCACCCGTGTTCGCAACCTATTACTTGAAGGTGGCGTTGCACA AGCAACGTTAGATAACCTTGCACGTGAAAAATGGTTGGAACAAACCCTTGATGACGAAGCAAAACAAAACCAACTTGAAC AGCTTGCAGAACAACACGAAGAACTACGCAAAGAGTTTGAACGTAAACTTGAGATCAAACGCAACAAGATCATTCAAGGG GACGATTTAGCACCGGGCGTATTAAAAGTGGTGAAAGTGTATCTTGCGGTGAAACGTCAAATTCAACCTGGGGATAAAAT GGCAGGTCGTCACGGTAACAAAGGGGTTATCTCAAAAATTAACCCAGTTGAAGATATGCCGTATGACGAAAACGGTCAGC CGGTTGAGATCGTATTAAACCCATTGGGCGTTCCATCTCGTATGAACATCGGTCAGATCCTTGAAACTCACTTAGGTCTG GCAGCTCGTGGTATCGGTGACCAAATCGACAAGATGATCAAGCAACAGCAAGAGATTGCGAAGTTACGCGAATATATCCA AAAAGCCTATGACTTAGGTCACGGAGCGCAAAGCGTAGATTTAAGCACCTTCTCTGATGAAGAAGTGATGCGTTTAGCAC AAAACTTACGCAAAGGCTTACCGCTTGCAACACCGGTATTTGACGGTGCACACGAAAGCGAGATCAAAGGCTTATTAGAA TTAGGTGGATTACCGACATCAGGTCAAATTACTTTATATGATGGACGTACCGGTGAGAAATTTGAGCGTCCGGTAACCGT AGGTTATATGTATATGCTCAAATTGAACCACTTAGTTGATGACAAAATGCACGCTCGTTCAACAGGTTCTTATAGTCTTG TTACCCAACAACCACTCGGTGGTAAAGCACAGCTCGGTGGTCAGCGTTTCGGTGAGATGGAGGTATGGGCATTAGAAGCA TACGGTGCCGCTTACACCTTACAAGAAATGCTCACGGTGAAATCGGACGACGTAAACGGTCGTACGAAGATGTACAAAAA CATCGTGGACGGTACACACTATATGGAACCGGGTATTCCAGAGTCATTCAACGTAATCACGAAAGAAATCCGTGCATTAG CGATTGATATGGAGTTGGATGAAGCGTAA Protein sequence : MAYSYSEKKRIRKSFGKRSQVLNVPYLLTIQLDSFDKFIQRDPEGLQGLEAAFRSVFPIVSSNGATELQYVSYELGEPVF DVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHASGKVLYNARIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNMFFETATFHIEDNRLLMT LVPERLRGETAAFDIEANGKIYVESGRRITARHIRALEKDNITQIQVPTEYIVGRVTARDYVDLSTGEIVCPANSEIGLE TLAALAQAGYNEIEVLFTNDLDYGPYISETLRIDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSTDRYDLSAV GRMKFNRSLDIPEGVGTGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGSGGLTRERAGFEVRDVHTTHYGRLCP IETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEEGAYVIAQANSNLDENFRFTDTYVTCRGEH GESGLYRPEEIHYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVIAK RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVKLGEPVGRGEILADGPSTDLGELALGQN IRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKG GDILVGKVTPKGETQLIPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKDIEEIQLREAKKD LTEELEILEAGLFTRVRNLLLEGGVAQATLDNLAREKWLEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQG DDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGL AARGIGDQIDKMIKQQQEIAKLREYIQKAYDLGHGAQSVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLE LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQLGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 83 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 83 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 83 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 83 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 83 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 82 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 70 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 64 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 62 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| rpoB | YP_008124725.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 8e-176 | 46 |
