|
Name : SCE1572_03070 (SCE1572_03070) Accession : YP_008147077.1 Strain : Sorangium cellulosum So0157-2 Genome accession: NC_021658 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 810171 - 814307 bp Length : 4137 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGCCGTCGGTCGTCCAATCCAACTTCCGCGTCCGTAAGAACCTGGGTCGCGTTCGTCGCATCATCGACGTCCCCAACCT GATCGACATCCAGAAGTCGAGCTACGACAAATTCCTCCAGATGTCCGTTCCGCCGAACGAGCGGGAGGAGGTCGGGCTTC AGGCGGTGTTCCGCTCGGTCTTCCCGATCAAGGACTTCAACGGCACGAGCGAGCTCGTCTTCGTCTCGTACAACCTCGAG CCGCCGAAGTACGACGTCGACGAGTGTCGCCAGCGCGGCATGACCTACTCGGCCCCGATCAAGGTCACGAACCAGCTGAT GATCTACGACACCCGCGACGGCGGGGAGCGGATCGTGCGCGACATCAAGGAGCAGGAGGTCTACTTCGGCGAGCTCCCGC TGATGACCGAGACGGGCACGTTCATCATCAACGGGACCGAGCGCGTCGTCGTCAGCCAGCTGCACCGCAGCCCCGGCGTC TTCTTCGACCACGACAAGGGCAAGACGCACTCGAGCGGCAAGCTGCTCTACTCCGCGCGCGTCATCCCGTACCGCGGCTC GTGGCTCGACTTCGAGTTCGACCCGAAGGACATCATCTACGTGCGCATCGATCGGCGGCGGAAGATGCACGCGACCGTGC TGCTGCGCGCGCTCGGGTACTCGACGCAGGACCTGCTGAACTACTTCTATTCGACCGAGACCGTGTACCTGGAGAAGGGG GGCAAGTACTCGAAGAGCATCGAGTACGATCTCCTCGCCGGTCAGCGGACGACGCGCGACATCAAGATTGGCAACGACGT CATCGTCAAGAAGAACACGAAGTTCACCCGCGCCGCCATCCGGAAGATGAAGGAGGCGAAGCTCGAGCGGCTCAGCCTCG AGCCGGAGGAGCTCGTCGGGAAGGTCGCCGCGCACGACATCGTCGACCCGGAGACGGGCGAGGTCGTGGTCGAGGTCAAC GAGGAGCTCACCGAGGCGAAGCTCGAGCGGCTGCGTGACGCGAACATCGAGCAGTTCCGCATCCTCTTCATCGACGGCCT GAACGTGGGCTCGTACCTCCGCGACACGCTCCTCACCGACAAGGTGAAGACGATGGAGGACGCGATCCTCGAGATCTACC GCCGGCTGCGGCCCGGCGATCCGCCGACGCTCGAGACCGCGAAGACCCTGTTCCACAACCTGTTCTTCAACGCCGAGCGC TACGACCTGTCGAAGGTCGGCCGGCTGAAGCTGAACTACAAGTTCTACCGGGACGTCCCCGAGGACGAGCGGCCGGGGCT CGATCTCACGGTGCTCACGCCGCAGGACATCCTGGAGACGGTGCGCCACCTGATCGAGCTGAAGAACGGGCGCGGCTCGG TCGACGACATCGACCACCTCGGCAACCGCCGCGTCCGCGCGGTCGGCGAGCTGATGGAGAATCAGTATCGCATCGGCCTC GTCCGCATGGAGCGCGCGATCAAGGAGCGCATGAGCATGTCGCAGGAGATCGACACGCTCATGCCCCACGACCTGATCAA CGCGAAGCCGGTCAGCGCGGTCGTGAAGGAGTACTTCGGGAGCTCGCAGCTCTCGCAGTTCATGGACCAGACCAACCCGC TCTCCGAGGTCACCCACAAGCGCCGGCTCTCGGCGCTCGGGCCGGGCGGCCTCACCCGCGAGCGGGCCGGGTTCGAGGTG CGCGACGTCCACGCGACCCACTACGGGCGCATCTGCCCGATCGAGACGCCGGAAGGCCCGAACATCGGCCTCATCGCCTC GCTGTCGACGTTCGCCCGCGTGAACGAGTTCGGCTTCGTCGAGACGCCGTACCGCAAGGTCGAGAACGGCCGCGTGACCG AGGACGTGATCTGGCTCTCCGCGCTCGAGGAAGAGGGCAAGTACATCGCGCAGGCGACCGTGAACCTCGACGAGAGCGGG CGCTTCAAGGAGTCGCTCGTCTCGGCCCGCTACAACGGCGAGTTCAAGATCGTCACGCCCGAGATGGTGGAGCTCATGGA CGTCGCGCCGAACCAGATGGTGTCGGTCGCCGCCGCGCTCGTGCCCTTCCTCGAGCACGACGACGCGAACCGCGCGCTCA TGGGCGCCAACATGCAGCGCCAGGCCGTGCCGCTCGTCCAGTCGCACGCGCCGCTCGTGGGCACCGGCATGGAGGAGCGG CTCGCCCGCGACTCCGGCGTCTGCGTGATCGCGCGGCGCCCCGGCGTCGTCGAGAGCGTCGACGCGACGCGCATCGTCGT CCGGGCCGAGGGCGAGGGCGCCGAGGTGCCGGACATCTATCACCTCATGAAGTTCCAGCGCTCGAACCAGTCGACCTGCT ACACGCAGAAGCCGGTCGTCCGGACGGGCGAGGTGGTGAAGAAGGGCGACGTGCTCGCCGACGGCCCGTCGACGGACATG GGCGAGCTCGCGCTCGGCCAGAACGTGCTCGTCGCGTTCATGCCGTGGCAGGGCTACAACTTCGAGGACTCCATCCTCGT GTCCGAGCGCATCGCCAAGGACGACGTGTTCACCTCGATCCACATCGAGGAGTTCGAGTGCGTCGCCCGCGACACGAAGC TCGGCAAGGAGGAGATCACCCGCGACATCCCGAACGTCGGCGAGGAGGCGCTCAAGGACCTCGACGACTCCGGCATCGTC CGCATCGGGGCCGAGGTGCGCCCGGGCGACATCCTGGTCGGCAAGATCACCCCGAAGGGCGAGACCCAGCTCTCGCCCGA GGAGAAGCTGCTCCGCGCGATCTTCGGCGAGAAGGCCGGCGACGTGCGCGACAGCTCGCTCAAGGTGCCGCCCGGCGTCG GCGGGATCGTCATCAACGCCCGCGTGTTCTCGCGCAAGGGGACCGAGAAGGACGACCGCGCGCGGGACATCGAGGACCAG GAGCGGGCCCGGATCGAGCGGACGCGCGACGAGGAGATCAAGATCCTCCGCGACTCGTTCTTCCGCCGCATCCGCGAGCT CCTCCTCGGCAAGGAGGCGACGGGCAAGCTCGTCGACGACAAGGGCAAGGTGCTCTTCCAGAAGGGCGCCATCATCGACG AGGCCTCGCTCGCCGAGATCCCCCGCAAATACTGGGGCGAGATCCCCGTCGACGACGCCGAGCGGGTCCAGCAGATCCTG CGGGACCTCGAGGAGCTCGTCCGCACGCGCGAGGAGCACTTCCGGGACAAGATCGATCGCCTGTCCAAGGGCGACGAGCT GCCGCCGGGCGTCATCAAGATGGTGAAGGTCTATATCGCCATCAAGCGCAAGCTCCAGGTCGGCGACAAGATGGCGGGCC GCCACGGCAACAAGGGCGTCATCAGCCGCATCCTCCCCGAGGAGGACATGCCGTACCTGCAGGACGGCAGGCCGGTCGAT CTCGTGCTCAACCCGCTCGGCGTGCCGAGCCGCATGAACGTCGGTCAGATCCTCGAGATCCACCTCGGGTGGGGCGCCTT CGAGCTCGGCAACCAGCTGCAGAGCATGCTCGAGCAGCAGCGGGCGACCGCCGAGATCAAGGAGCACCTGAAGGCCATCT ACGCGGGCGACGAGTCGATGGCCGGCTTCTTCGACGACCTCGACGACGGCGACGTCAAGCGCTTCGTCAAGACGGTCGAC GAGGGCGTCTTCATGGGATCGCCGGTGTTCGACGGCGCTCATGAGTCGGATATCAAGGGCGCTCTCGAGCTCGCGGGTCT CCCGACCTCGGGCCAGGCGATCCTCTTCGACGGGCGCACGGGCGATGCGTTCGATCAGAACGTCACGGTGGGCATCATGT ACATGCTGAAGCTCCACCACCTGGTCGACGACAAGATCCACGCGCGCTCGATCGGGCCCTACTCTCTCGTCACGCAGCAG CCCCTCGGCGGCAAGGCGCAGTTCGGCGGGCAGCGGCTCGGCGAGATGGAGGTCTGGGCGATGGAAGCCTACGGCGCGGC CTACGCGCTGCAGGAGTTCCTCACCGTGAAGAGCGACGACGTGATGGGCCGCACCCGGATGTACGAGGCCATCGTGAAGG GGGATTACACCCTGGAGGCGGGGCTGCCGGAGAGCTTCAACGTGCTCATCAAGGAGCTCCAGTCGCTGTGCCTGAACGTG GAGCTGGTCGAGACGAGCGGAGGCGTGGAGGCCTCGGCCGCGGAGGAAGAGGAGTGA Protein sequence : MPSVVQSNFRVRKNLGRVRRIIDVPNLIDIQKSSYDKFLQMSVPPNEREEVGLQAVFRSVFPIKDFNGTSELVFVSYNLE PPKYDVDECRQRGMTYSAPIKVTNQLMIYDTRDGGERIVRDIKEQEVYFGELPLMTETGTFIINGTERVVVSQLHRSPGV FFDHDKGKTHSSGKLLYSARVIPYRGSWLDFEFDPKDIIYVRIDRRRKMHATVLLRALGYSTQDLLNYFYSTETVYLEKG GKYSKSIEYDLLAGQRTTRDIKIGNDVIVKKNTKFTRAAIRKMKEAKLERLSLEPEELVGKVAAHDIVDPETGEVVVEVN EELTEAKLERLRDANIEQFRILFIDGLNVGSYLRDTLLTDKVKTMEDAILEIYRRLRPGDPPTLETAKTLFHNLFFNAER YDLSKVGRLKLNYKFYRDVPEDERPGLDLTVLTPQDILETVRHLIELKNGRGSVDDIDHLGNRRVRAVGELMENQYRIGL VRMERAIKERMSMSQEIDTLMPHDLINAKPVSAVVKEYFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEV RDVHATHYGRICPIETPEGPNIGLIASLSTFARVNEFGFVETPYRKVENGRVTEDVIWLSALEEEGKYIAQATVNLDESG RFKESLVSARYNGEFKIVTPEMVELMDVAPNQMVSVAAALVPFLEHDDANRALMGANMQRQAVPLVQSHAPLVGTGMEER LARDSGVCVIARRPGVVESVDATRIVVRAEGEGAEVPDIYHLMKFQRSNQSTCYTQKPVVRTGEVVKKGDVLADGPSTDM GELALGQNVLVAFMPWQGYNFEDSILVSERIAKDDVFTSIHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDDSGIV RIGAEVRPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLKVPPGVGGIVINARVFSRKGTEKDDRARDIEDQ ERARIERTRDEEIKILRDSFFRRIRELLLGKEATGKLVDDKGKVLFQKGAIIDEASLAEIPRKYWGEIPVDDAERVQQIL RDLEELVRTREEHFRDKIDRLSKGDELPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVISRILPEEDMPYLQDGRPVD LVLNPLGVPSRMNVGQILEIHLGWGAFELGNQLQSMLEQQRATAEIKEHLKAIYAGDESMAGFFDDLDDGDVKRFVKTVD EGVFMGSPVFDGAHESDIKGALELAGLPTSGQAILFDGRTGDAFDQNVTVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQ PLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVMGRTRMYEAIVKGDYTLEAGLPESFNVLIKELQSLCLNV ELVETSGGVEASAAEEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 57 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 57 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 57 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 57 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 57 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 56 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 56 |
| SCE1572_03070 | YP_008147077.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 56 |
