Gene Information

Name : lolD (I635_08965)
Accession : YP_008179719.1
Strain : Alteromonas macleodii Ionian Sea UM7
Genome accession: NC_021713
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1990303 - 1991013 bp
Length : 711 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGCAAGACGTGCTAATTTGCCGTAATATAAATAAGACCTATCAAGATGGCAGCAACGCCACCCCCGTATTACACGATGT
ATCACTTTCAATAAAAGCCGGCGAACACGTCGCGATTTTGGGAAGCTCTGGCTCAGGTAAAAGTACGCTTTTGCATATAC
TTGGAGGGTTAGATAAACCAACAAGTGGCGACGTACAATTCAATGGAAAATCCCTTAGCCAGTTGTCGAGTAACGCGTTA
GCAAAGCTACGCAACGACGAAATGGGCTTTATTTACCAGTTTCACCATCTTTTAGGTGAATTCACAGCGTTAGAAAATGT
AGCCATGCCACTTCGTATTAGGGGGCTTTCACCAAAAGCAGCCCAAGCTAAGGCGCGAGACATGCTTGAAGAAGTGGGGT
TGTCTCACCGTATTGAACACTTGCCTTCTGCCATGTCTGGCGGAGAACGCCAGCGAGTGGCTATCGCCCGAGCGCTGGTC
ACCGAGCCTTCTGTGGTGCTGGCAGATGAACCTACAGGCAACCTTGACGATTCTACGGGTGAGCAAATTTACAAGCTGCT
CACGAGTTTGAGCGAGAAGAAAGGGACATCATTTGTTGTGGTAACGCACGATATAACGCTGGCTGCAAAGATGGACAGAG
TACTTAAGATAAAAGATGGCCGCTTAGCCAGTGACGCTGAGAGTAAGGAGCGCCAAGATGCTCGCTTTTGA

Protein sequence : 
MQDVLICRNINKTYQDGSNATPVLHDVSLSIKAGEHVAILGSSGSGKSTLLHILGGLDKPTSGDVQFNGKSLSQLSSNAL
AKLRNDEMGFIYQFHHLLGEFTALENVAMPLRIRGLSPKAAQAKARDMLEEVGLSHRIEHLPSAMSGGERQRVAIARALV
TEPSVVLADEPTGNLDDSTGEQIYKLLTSLSEKKGTSFVVVTHDITLAAKMDRVLKIKDGRLASDAESKERQDARF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_008179719.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 1e-35 46
lolD YP_008179719.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 2e-41 44