Gene Information

Name : clpB (F504_4472)
Accession : YP_008238201.1
Strain :
Genome accession: NC_021745
Putative virulence/resistance : Virulence
Product : ClpB protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1266834 - 1269551 bp
Length : 2718 bp
Strand : -
Note : FIG00025216

DNA sequence :
ATGGCCACCCCACTCAAGACCTTGATCGCCAAGCTGAACGCGACCAGCCGGCAGGCCGCCGAGCGCGCGGCGTCGCTGTG
CATGGCGCGCGGCAACTATGAAGTCGACCTGGAGCACTTGTTCCTGGCGCTGCTCGAAAACCGCCGCAGCGATTTCGCCG
TCGCGGCGCGCGCCAGCGGCATCGATCCGGCCGCGCTGCAGCGCGACCTGGAGGCCGAGGTGGGGCGCTTCCAGACCGGC
AACACGCGCACGCCGGCGTTCTCGCCGTATCTGCCCAAGCTGTTCGAGCATGCGTGGCTGATCGCCTCGCTGGATTCGCA
GATCACGCGCATCCGCTCGGGCCACCTGCTGCTCGCGCTGCTGACCGAGCCCAGCCTGGCCGCGCTGGCCGAACGCGGCT
CGCGGCTGTTCGGCAGCTTCGAGGTGGAGCGGCTCAAGCACGATTTCGAGCGCATGACCACCGGCTCCGACGAGCAGGAG
CAGGCCGTCGATTTCGCCGACGGCACGGCCGTGCAGACGGACGACGGCCGCACCGCGCCCGCCGCCGCGCTGGGCGCGAC
ACCGGCCCTCGACCAGTTCACCGTGGACCTGACGCAGGCTGCCCGCGAAGGCCGCATCGACCCGGTGATCGGGCGCGACA
CCGAGATCCGCCAGGTGGTCGACATCCTGATGCGCCGGCGCCAGAACAACCCCATCCTGACCGGCGAGGCCGGTGTCGGC
AAGACGGCGGTGGTGGAGGGGCTTGCGCTGCGCGTGGCCGCCAACGACGTGCCGACGCCGCTGCGGGGCGTGACGCTGCG
CACGCTCGACATGGGCCTGCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGCCTGAAGAACGTGATCGACG
AGGTCAAGAAGAGCCCGAAGCCGATCATTCTGTTCATCGACGAGGCGCACACCATCATCGGCGCGGGCGGGCAGGCCGGG
CAGAACGATGCAGCCAATCTGCTCAAGCCGGCACTGGCGCGCGGTGAGCTGCGCACCATCGCCGCGACCACCTGGAGCGA
GTACAAGAAGTATTTCGAAAAGGACGCCGCTCTCGCGCGCCGCTTCCAGGTCGTCAAGGTCGACGAGCCGAGCGAGCCGC
TGGCCGCGGCCATGCTGCGCGGCATGGCACCGCTGATGGAGCGCCACTTCGGCGTGCGCGTGCTGGACGAGGCCATCACC
GAGGCCGTGCGGCTGTCGCATCGCTACATCAGCGGACGGCAGCTGCCGGACAAGGCGGTCAGCGTGCTGGATACGGCGTG
CGCCAAGGTGGCACTGGGCCAGAGCGCCACGCCGGGCGCCATCGAAGACGACCAGAAATTGCTGGAGCGTCTGCTGGGCG
AGATCGCCGCGCTGCAGCGCGAGCAGAGCGCCGGCGCGGCGCACGATGCCCGCCTCGAAGCGCTGCAGGCCAAGCGCGCC
GAGCTGGAGCAGCGCATTGCGCAGAACACCGAGCGCCTGGCCCGGGAGCGTGCGCTGGTCGCGCGCATCCAGGCGCTGCG
CGAGGCGCGCGAAAGCGACGCGGCGCAGGCCGGCGCGCAGGATGCGGAGCCCGTGGCGGCCAACAGCGATGTGGTGGCGC
TGTCGCCCAAGCGCGCCCGTGCCGCCGACGCGCCGGACGAACTGGCCACGCTGCTGGCCGAGCTGCGCGCGCTGCAGGGC
GAGGCGCCCATGGTGCCGCTGCAGGTGGACGGCCATGTCGTGTCGGAGATCGTCTCGGCCTGGACGGGCATTCCGCTGGG
CCGCATGGTCAAGGACGAGCTGCGCACCGTGCTGAACCTGAAGCCGCTGCTGGCCGCGCGCGTGATCGGCCAGGACCACG
CGCTGGACGCCATCGCCCAGCGCGTGCGCACCGCCTCGGCCAACCTGGAAGACCCGAACAAGCCGCGCGGCGTGTTCCTG
TTCGCGGGCCCGTCGGGTGTGGGCAAGACCGAGACGGCGCTGGCGCTGGCCGACATCCTCTACGGCGGCGAGCGCAAGCT
CATCACCATCAACATGAGCGAGTACCAGGAGGCGCACAGCGTCTCGGGCCTGAAGGGCTCGCCGCCGGGTTACGTGGGCT
ACGGCGAGGGCGGTGTGCTGACCGAGGCGGTGCGCCGCAACCCGTACAGCGTGGTGCTGCTGGACGAAGTCGAGAAAGCC
CACCCCGACGTGCTGGAGATGTTCTTCCAGGTGTTCGACAAGGGCGAGATGGACGACGCCGAGGGCCGCCCCATCGACTT
CCGCAACACCATCATCATCCTGACCTCGAACGTGGGCTCGTCGGCCATCATGCAGGCCTGCCTGAACCAGCCCGCCGAGG
CGCTGCCCGACGCCGACACCCTGGCCGAGACGCTGCGGCCGGTGCTGTACAAGGCCTTCAAGCCGGCCTTCCTGGGTCGG
ACCAAGGTGGTGCCCTACTACCCGATCGCCGACGACGTGCTGGCCGAGATCATCACGCTCAAGCTTGGCCGCATCCGCGA
TCGCGTGGCCGCCAACCACAAGGCGACGTTCCAGTGGGACAACGCGCTGGTGGAATCCGTGCTGGCCCGCTGCACCGAAG
TGGATGCGGGCGCGCGCGCGGTCGACCACATCCTCAACGGCACGCTGCTGCCCGAGATCGCCGAAGCGGTGCTCACGCGC
ATGGCCGAAGGCGGCAGCGTCGAGAAGATCAAGGTCAGTGTCGGCAAGACCGGCGAGTTCAAATACCGCATCAACTGA

Protein sequence :
MATPLKTLIAKLNATSRQAAERAASLCMARGNYEVDLEHLFLALLENRRSDFAVAARASGIDPAALQRDLEAEVGRFQTG
NTRTPAFSPYLPKLFEHAWLIASLDSQITRIRSGHLLLALLTEPSLAALAERGSRLFGSFEVERLKHDFERMTTGSDEQE
QAVDFADGTAVQTDDGRTAPAAALGATPALDQFTVDLTQAAREGRIDPVIGRDTEIRQVVDILMRRRQNNPILTGEAGVG
KTAVVEGLALRVAANDVPTPLRGVTLRTLDMGLLQAGASVKGEFENRLKNVIDEVKKSPKPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVDEPSEPLAAAMLRGMAPLMERHFGVRVLDEAIT
EAVRLSHRYISGRQLPDKAVSVLDTACAKVALGQSATPGAIEDDQKLLERLLGEIAALQREQSAGAAHDARLEALQAKRA
ELEQRIAQNTERLARERALVARIQALREARESDAAQAGAQDAEPVAANSDVVALSPKRARAADAPDELATLLAELRALQG
EAPMVPLQVDGHVVSEIVSAWTGIPLGRMVKDELRTVLNLKPLLAARVIGQDHALDAIAQRVRTASANLEDPNKPRGVFL
FAGPSGVGKTETALALADILYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKA
HPDVLEMFFQVFDKGEMDDAEGRPIDFRNTIIILTSNVGSSAIMQACLNQPAEALPDADTLAETLRPVLYKAFKPAFLGR
TKVVPYYPIADDVLAEIITLKLGRIRDRVAANHKATFQWDNALVESVLARCTEVDAGARAVDHILNGTLLPEIAEAVLTR
MAEGGSVEKIKVSVGKTGEFKYRIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-147 45
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-142 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-142 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB YP_008238201.1 ClpB protein VFG2076 Protein 0.0 52
clpB YP_008238201.1 ClpB protein VFG2084 Protein 7e-149 46