|
Name : SEEH1578_10615 (SEEH1578_10615) Accession : YP_008246190.1 Strain : Salmonella enterica 41578 Genome accession: NC_021810 Putative virulence/resistance : Unknown Product : fimbrial outer membrane usher protein TcfC Function : - COG functional category : - COG ID : - EC number : - Position : 2144728 - 2147415 bp Length : 2688 bp Strand : + Note : - DNA sequence : GTGAGTCGTTATTTCTGGATGTATTATTTACTGGGATTGTGCAGTTTTACCAGCCAGGCAACTCTTATTCCCCCACCTGG ATTTGAATCTCTGCTGGAAGGACAGACTGAGCAAATTGAAGTGTTGCTACCAGGGCATTCACTGGGATTATTTCCGGTGG TGGTTAAACCGGACACCGTGCAGTTCATGTCCCCATTGATGGTACTTGAAAGCAGTGGGCTTGCCGCGTTGCCGGTCGCA GAACGGCAAAAAGCGCTGGCTGCACTCAGCCGTCCGTTGCTACGTAACAGCAATCTGGTCTGTGGTGTCTCAGAAGCAAA AGACAGCAGCGAGTGTGGTTACGTGGCAACAGATAAAGAGGATGTTGCGGTTATTTTTGATGAGAACAACGGTCAGTTAT CTTTGTTTCTTAACCGGGACTGGTTGCCGGATGAAGAACGACGTGATAAACGCTGGCTGACTCCGACCCCGGAGGGTGTC AGCGCATTTATTCACCGCCAGACGCTGTATCTGAGTGATGATCTCCACAGTCGTAATATGACACTGAATGGTAGCGGTGC CCTGGGGCTTGGTGACGGTCGTTATCTGGGAGGCAACTGGGCGGCTATCTGGAATCAGTCAGAACATTACAATAACAGTC AGGCCTGGTTTGACAATCTGTTTGTCCGTCAGGATCTCGGCAATCAGTATTATCTCCAGGCTGGTCGGATGGATCAGCGG AATCTGTCCAGCGCCACGGGGGGGGATTTTGGGTTCAGTCTGCTTCCCCTGAGCCGGTTTGATGGATTACGAACCGGGAC CACCCAAGCTTATGTTAACCATGAGGTGGACCAGAATGCCACTCCGGTTATGGTTCAGGTTACCCGAAATGCCCGTATTG ATATTTATCGTGGCAGCGAGTTGCTGGGGAGTCAGTTCCTGACCCCGGGAATGCATACCCTGGATACTCACTCTCTTCCA CCGGGAAGCTATCCTCTGGCGTTGCGGGTGTATGAGGATGGGATTCTGCGGCGAACGGAGACCCAGCCCTTCAGTAAGGG GGGCAATAGCTTCAGTGCACAGACCCAGTGGTTTATTCAGAGCGGGCTGGAAGATACCGGGGATAAAGCCAGCCATTATG ACGGTGAGACTGTCATGGCTGCCGGATTCCGAACTGGGCTGCGGAAAAATATCAGTCTGACCGAAGGTATCTCTCTGGCA CATGAGGCCTGGTACAGTGAAACCCGACTGAATTCACAGCATGCAGTGCTGGATGGCACGCTGGACCTTTCTGCCGGGAT ACTGCATGGGACAGACAGCACGAGCGGTAACACTGAGCAGGTGACATACAACGACGGATTTTCCGCGAGTCTGTGGCGTA ACCATACGGAAAGTGATGCCTGTAGTGGTCGTCATCCACAGTCAGTGCATGCCAGTATGACCTGCCAGACTTCGATGAAC GCCTCCCTGTCGGTTCCGGTGGGGAACTGGTATGCCCTACTGGGATACAGTACCAGCAGGACAGAAGGTCGGCCGGTTTA CCGGGGATATGATGATAACAGTGACAAAGAAAATGTGTTCTGGCGACAGGCATACATCCCTGCCTCTCACCGCGAATCTG CTCAGGCTAGTGCAACGTACAGCCTTAATATGGCTGGCATGAATATTAATACCCATGGGGGAGTATGGCGAACCCGAAAT GACGGAGTGAATGATGATGGCTTGTTTATGAGTGTCAGTGTGTCATATGCCTCTCAACCACCGACAATGACTGGCAGTAA TGGGTATACCTCAGCCGGGACCGATATTCACAGTAGCCGGAATCAAAAAACACAGACGTCCTGGAATGTGAACCATGTGA GATCCTGGCAGCAGGATCTGTATCGTGAACTGTCGGTGGGTTTCTCCGGTTATAACGACGACAGCTGGAGCGGGAGTCTC GGCGGACGCATGAGCGGCCGTATGGGTGAACTGAGCGCCACTATCAGTAACTCCCATCAACGTAATGCGGGCAGCGCCAG TTCACTCACCGCTGGCTACAGCTCGTCTCTGGCGTTATCCCGTAATGGACTGTTCTGGGGAGGTGGTCAGGACGGTGAAC CGGCCTCTGGCATGGCGGTGAACGTGGAGTCAGAGGGGGACGAGGGCAGTAGCGGGAAAGTAGTCAGCGTTCGTGGCAGC AGCCAGCCGTTCAGTCTCGGTTTTGGTCAGCAGTCGCTGTTGCTGATGGAAGGCTATAACGCCACGGAGGTGACCATTGA GGATGCAGGGGTTAGTTCACAGGGTATGGCAGGCGTAAAAGCGGGAGGGGGAAGCAGGCGTTACTTCCTGACACCCGGGC ATCTGCTGGTTCACAACATCAGCGCCAGTATGAGCCGACTGTACGTTGGCCGCGTACTGGACAAGGATGGCAGACCGCTG CTGGACGCACAGCCACTGAACCATCCATTTTTGTCGTTGGGACCTTCCGGGCGATTTAGCCTGCAGAGCGAGCATAAAGA ATCCAGCCTGTGGCTGCTGTCAAAAAACAGGATCCTGCGTTGTCCGATGTCAGTACATAAACGTCGGGATGTTATGCAGG TAGTGGGTGATGTGCGGTGTGAATTAAGTGACGTGGATGCCCTGCCACAGGCGTTGCAAATATCGCCGCGGGTCATCCGT TTGCTGAACGTGGCAGGTTTGCTGCGCCATTCCGTTCAGGAAGCATGA Protein sequence : MSRYFWMYYLLGLCSFTSQATLIPPPGFESLLEGQTEQIEVLLPGHSLGLFPVVVKPDTVQFMSPLMVLESSGLAALPVA ERQKALAALSRPLLRNSNLVCGVSEAKDSSECGYVATDKEDVAVIFDENNGQLSLFLNRDWLPDEERRDKRWLTPTPEGV SAFIHRQTLYLSDDLHSRNMTLNGSGALGLGDGRYLGGNWAAIWNQSEHYNNSQAWFDNLFVRQDLGNQYYLQAGRMDQR NLSSATGGDFGFSLLPLSRFDGLRTGTTQAYVNHEVDQNATPVMVQVTRNARIDIYRGSELLGSQFLTPGMHTLDTHSLP PGSYPLALRVYEDGILRRTETQPFSKGGNSFSAQTQWFIQSGLEDTGDKASHYDGETVMAAGFRTGLRKNISLTEGISLA HEAWYSETRLNSQHAVLDGTLDLSAGILHGTDSTSGNTEQVTYNDGFSASLWRNHTESDACSGRHPQSVHASMTCQTSMN ASLSVPVGNWYALLGYSTSRTEGRPVYRGYDDNSDKENVFWRQAYIPASHRESAQASATYSLNMAGMNINTHGGVWRTRN DGVNDDGLFMSVSVSYASQPPTMTGSNGYTSAGTDIHSSRNQKTQTSWNVNHVRSWQQDLYRELSVGFSGYNDDSWSGSL GGRMSGRMGELSATISNSHQRNAGSASSLTAGYSSSLALSRNGLFWGGGQDGEPASGMAVNVESEGDEGSSGKVVSVRGS SQPFSLGFGQQSLLLMEGYNATEVTIEDAGVSSQGMAGVKAGGGSRRYFLTPGHLLVHNISASMSRLYVGRVLDKDGRPL LDAQPLNHPFLSLGPSGRFSLQSEHKESSLWLLSKNRILRCPMSVHKRRDVMQVVGDVRCELSDVDALPQALQISPRVIR LLNVAGLLRHSVQEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tsaC | NP_454914.1 | outer membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 0.0 | 99 |
