Gene Information

Name : CFSAN002050_13485 (CFSAN002050_13485)
Accession : YP_008260608.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2458933 - 2459901 bp
Length : 969 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATGCTTCCAACGCAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACGTTATTTACCATACATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGTTAATTGGCACCGCTAATCGATCGGTTATCGATCCTGAATTGCTATAC
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAACCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTCTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGTCAACAGATTTATCCTGCCCCTCCTGTGGTA
GTCCCTGTATATTCAGGTTGGTGCCAGCTTACATTAATCGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTCGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGAATCTACGCAAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGACGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGTCCAATGTCAAAGAGTGAC
GGAACGTCTTCAGTCGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGGTCGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGGGGATGTTTTGCGCCAGAGGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGCAATGAATTTATGGTGCGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Protein sequence : 
MLRIANEERPWVEMLPTQGATIGELTLSMQQYPVQQGTLFTIHYHNELGRVWIAEQCWQRWCEGLIGTANRSVIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYSGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 3e-142 99
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 5e-143 99
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 3e-98 99
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 1e-141 98
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 1e-141 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_13485 YP_008260608.1 type III secretion system protein SsaQ VFG0518 Protein 2e-143 99