|
Name : rpoB (A7H1H_1817) Accession : YP_008331712.1 Strain : Arcobacter butzleri 7h1h Genome accession: NC_021878 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 1763828 - 1767976 bp Length : 4149 bp Strand : - Note : Pfam matches to PF00562.23 RNA_pol_Rpb2_6, and to PF04565.11 RNA_pol_Rpb2_3, and to PF04560.15 RNA_pol_Rpb2_7, and to PF10385.4 RNA_pol_Rpb2_45, and to PF04563.10 RNA_pol_Rpb2_1, and to PF04561.9 RNA_pol_Rpb2_2, and to PF04561.9 RNA_pol_Rpb2_2 DNA sequence : ATGTTAAACTCTTTAAAATCTGGTAATAGACTTAGAGTTGATTTTGCAAAAAATCCACAAAAAATTGAAATTCCAAACTT ACTACAGTTACAACAAACTTCATATGACACATTTTTAATGATTGGTCAAGAAGATAGAACTACTGCTGGTATAGAAAAAG TATTCAAATCTATTTTTCCAATTCATGATGTTCAAAATAGACTTACACTTGATTATTTAGGTAGCGAAGTTGGTAAACCT AAATATGATGTTAGAGAGTCAATGGTTAGAGGACTAACTTATTCAATTCCTCTTAAAATTAATATTAGATTAACTTTATG GGATTTAGACGAAAAAACTGGTGAAAAAATCGGTGTTAAAGATATGAAAGAACAATCTTTATTCATCAGAGAAATTCCTT TAATGACTGATAGAACATCTTTTATTGTTAATGGTGTTGAAAGAGTTGTTGTTAATCAATTACATAGATCTCCTGGTGTT ATCTTCAAAGAAGAAGAATCAAATACTGCTGATAATAAACTTATTTATACTGGGCAAATTATTCCAGACCGTGGTTCATG GTTATATTTTGAATATGATTCAAAAGATGTATTATATGTAAGAATTAATAAAAGAAGAAAAGTTCCTGTAACAATTTTAT TTAGAGCATTAGGTTATTCTAAAGAAGATATTATCAAACTATTTTATCCAATTGTTAATATTAAAATTAAAAATAATAAA TTTTTAACTGAATTTAATCCTGATGATTTTATGGGAAGAATTGAATTTGATGTTAAAGATGACAAAGGTAACTTAGTTAT TGGTGCCGGAAAAAGATTAACTGCTAGAAAAGCTAAAGCTTTAATTGAAGGTGGATTAAAATTAATTGAATATCCTCTTG AACTTTTAATGGATAGAAGTACAGCAAATACAATTTATGATCCAGAATCTGGAGAAGTTTTATTTGATGCTTTAACAAAT CTTGATGAATTAAAATTAAAAAAACTTTTAGATTTAGGATTTGAGTCATTTGATATTGCAAATGATTTAGCTGTTGGAAT TGATGCTTCTATTATAAATGCATTTAAAGCTGATGCTGAATCTTTAAAATTATTAAAACAAACAGAACAAATTGATGATG AAAATGATTTAGCAGCAATTAGAATTTATAAAGTTATGAGACCAGGTGAGCCTGTAACTAAAGAAGCTGCAAAAGATTTT GTTAAAAAACTTTTCTTTGATCCAGAAAGATATGATTTAACAAAAGTTGGAAGAATGAAAATGAATCATAAATTAGGTGT AAATGTACCTGAGTACGTTACAACTTTAACTTATGAAGATGTTATCAAGACTGTTCAATATTTAGTAAAAGTTAAATCTG GTCATGGTCATATCGATGATAGAGATCACTTAGGAAATAGAAGAATTAGAGCAATTGGTGAATTACTTGCAAATGAATTA CATGCTGGTTTAATCAAAATGCAAAAAGCTATTAGAGATAAAATGACTACTTTAAGTGGAACATTAGAAGACTTAATGCC ACATGATTTAGTTAACTCTAAAATGATTACTTCAACAATTACTGAATTCTTTACAAGTGGTCAATTATCTCAATTTATGG ACCAAACAAATCCATTATCAGAAGTTACTCATAAAAGAAGACTTTCTGCATTAGGTGAGGGTGGTTTAGTAAAAGAGAGA GCTGGATTTGAAGTAAGGGACGTTCACCCAACTCACTATGGAAGAATCTGTCCAGTTGAAACTCCAGAGGGTCAAAATAT TGGACTTATCAATACTTTATCAACTTTCTCAAAAGTTAATGATTTAGGATTTATCGAAGCTCCATATAAAAAAGTTGTAG ATGGTGTTGTTACAAATGAAATTTCATACTATACAGCTACTCAAGAAGAGGGACTTGTAATTGCTCCTGGTTCAACAAAA GTTGATGAGAATGGAAAAATTATTGAACCATTGATTGAAGTTAGAAAAAATGGTGAAATTTTATTAATGGAAAGAAATAG TGTTGATTTAATAGATATTTCTTCTCAAATGGTTATGGGGGTTGCAGCTTCTTTAATCCCATTTTTAGAACATGATGATG CCAATAGAGCACTTATGGGTTCAAACATGATGAGACAAGCGGTTCCTTTATTAAGACCAAGTGCTCCTGTTGTTGGAACT GGATTAGAAAAAATTGTTGCGCGTGATGCATGGGAAGCAATTAAAGCTAATAGAGCTGGACTTGTAGAAAAAGCAGATGC AAAAAATATTTACATCAGAGGTGAAGATGAAAACGGTGCTTTCATTGATCACTATACTGTAAATAAAAATGTAAGAACAA ATAATAATACATCATTTGGACAAAGAATAGCAGTTAAAGAAGGTGATTTTGTTCAAAAAGGTCAAGTAATTGCTGATGGT CCATCTATGGATAAAGGTGAACTTGCTGTTGGTATTAATGCGATGGTTGCATTTATGCCATGGAATGGATATAACTACGA AGATGCTATTATTTTAAGTGAAAGATTAATTGAAGAAGATGCGTTCACATCTGTTCATATTTATGAAAAAGAGATTGAAT GTAGAGAATTAAAACACGGTAATGAAGAAATAACAAGAGATTTACCAGGTGTAAAAGAAGAATCAATTTCTCATTTAGAT AATTCAGGAATCGTAAAAGTAGGAACTTATGTTACTCCTGGAATGATTTTAGTTGGAAAAGTAACTCCTAAAGGTGAAAT TAAACCAACTCCAGAAGAAAGATTACTTAGAGCAATTTTTGGTGAAAAAGCAGGACATGTAATAAATAAATCTTTAGTAT GTCCAACATCAATGGAAGGTACTGTTGTTGATGTAAAAGTATTTACTAAAAAAGGTTATGAAAAAGATGATAGAGCTGTA GCTGAAATCGAATCAGAAAAAGCAGAACTTGATTTAAAACACCATGATAAATTATTGATGTTAGATAGAGAAGAGATTTT AAAAATCAATGATTTATTATTAAAAGCTACTTTAACTAAAGATGTAGAGTTAGACGATGTTGTTTATAAAAAAGGTGAAA CAATTCCTGTTGATGTTTTAAATAATGTTAATAGATTTGCTATGAAAAAAGTTGTATCTTCATATTCTAAAGAGATAGAA AAAGCATACAATGATATTAAAGAGTACTTTATTAAACAAAAAGCGCATTTAAGAGAAGAGCATGAAGAAAAACTTCAAAT TTTAGAACACGATGATATTTTATCTTCAGGTGTTATAAAACAAGTAAAAGTTTATATAGCAACTAAAAGAAAAATCAAAG TTGGGGATAAAATGGCTGGACGACATGGAAACAAAGGTATCGTTTCTAACATCGTTCCAAAAGTTGATATGCCATATTTA GAAGATGGAACAACAGTTGATGTTATTTTAAATCCACTAGGGGTTCCTTCTAGGATGAATATTGGGCAAATTCTTGAAGT TCACTTAGGATTAGCTGGTAAAAAACTTGGTAACCAAATTCAAGATATTTTTGAAGCAAAAAGAGCTGATTTTATTGCAG AACTAAGAGCAAAAATGACTGAAATTGCAAGTGTTGCAAAACTTATGAATGGTAAAGCATTTATGGATTCTTTAAATGAT GAAGAATTAGTTCAATACGCACAAGATTGGGCAAAAGGTGTAAGATTTGCTACTCAAATCTTTGATGGAGTAAAAGCAGA AGAATTTGCAAAATTATTTGAATTAGCAAAAATTGATAGTGATGGAAAATGTGTTCTTTTTGATGGGAAAACTGGTGAAA AAATGAAAGAAAGAGTAAACGTAGGTTATATGTATATGCTTAAACTTCACCACTTAGTTGACGAAAAAGTTCATGCTAGA AGTACAGGTCCATATTCTCTTGTAACACAACAACCAGTTGGAGGAAAAGCTCTATTTGGTGGACAAAGATTTGGAGAGAT GGAAGTTTGGGCATTAGAAGCTTATGGTGCAACAAATGTACTTAAAGAGATGCTTACAACAAAATCAGATGATGTTGAAG GTAGAACAAAAGCTTATAGAGCAATTGCGAATGGTGAAAATGTTCCTAATTCTGGAGTTCCAGAGACATTCTTCGTATTA ACAAAAGAGTTAAAAGCTCTAGCACTAGATGTAGAGATTTTTGGAGAGGTAGAAAACAATGAGCAATAA Protein sequence : MLNSLKSGNRLRVDFAKNPQKIEIPNLLQLQQTSYDTFLMIGQEDRTTAGIEKVFKSIFPIHDVQNRLTLDYLGSEVGKP KYDVRESMVRGLTYSIPLKINIRLTLWDLDEKTGEKIGVKDMKEQSLFIREIPLMTDRTSFIVNGVERVVVNQLHRSPGV IFKEEESNTADNKLIYTGQIIPDRGSWLYFEYDSKDVLYVRINKRRKVPVTILFRALGYSKEDIIKLFYPIVNIKIKNNK FLTEFNPDDFMGRIEFDVKDDKGNLVIGAGKRLTARKAKALIEGGLKLIEYPLELLMDRSTANTIYDPESGEVLFDALTN LDELKLKKLLDLGFESFDIANDLAVGIDASIINAFKADAESLKLLKQTEQIDDENDLAAIRIYKVMRPGEPVTKEAAKDF VKKLFFDPERYDLTKVGRMKMNHKLGVNVPEYVTTLTYEDVIKTVQYLVKVKSGHGHIDDRDHLGNRRIRAIGELLANEL HAGLIKMQKAIRDKMTTLSGTLEDLMPHDLVNSKMITSTITEFFTSGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKER AGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTFSKVNDLGFIEAPYKKVVDGVVTNEISYYTATQEEGLVIAPGSTK VDENGKIIEPLIEVRKNGEILLMERNSVDLIDISSQMVMGVAASLIPFLEHDDANRALMGSNMMRQAVPLLRPSAPVVGT GLEKIVARDAWEAIKANRAGLVEKADAKNIYIRGEDENGAFIDHYTVNKNVRTNNNTSFGQRIAVKEGDFVQKGQVIADG PSMDKGELAVGINAMVAFMPWNGYNYEDAIILSERLIEEDAFTSVHIYEKEIECRELKHGNEEITRDLPGVKEESISHLD NSGIVKVGTYVTPGMILVGKVTPKGEIKPTPEERLLRAIFGEKAGHVINKSLVCPTSMEGTVVDVKVFTKKGYEKDDRAV AEIESEKAELDLKHHDKLLMLDREEILKINDLLLKATLTKDVELDDVVYKKGETIPVDVLNNVNRFAMKKVVSSYSKEIE KAYNDIKEYFIKQKAHLREEHEEKLQILEHDDILSSGVIKQVKVYIATKRKIKVGDKMAGRHGNKGIVSNIVPKVDMPYL EDGTTVDVILNPLGVPSRMNIGQILEVHLGLAGKKLGNQIQDIFEAKRADFIAELRAKMTEIASVAKLMNGKAFMDSLND EELVQYAQDWAKGVRFATQIFDGVKAEEFAKLFELAKIDSDGKCVLFDGKTGEKMKERVNVGYMYMLKLHHLVDEKVHAR STGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGATNVLKEMLTTKSDDVEGRTKAYRAIANGENVPNSGVPETFFVL TKELKALALDVEIFGEVENNEQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| rpoB | YP_008331712.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
