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Name : rpoB (N220_13040) Accession : YP_008340007.1 Strain : Mannheimia haemolytica USMARC_2286 Genome accession: NC_021883 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2477213 - 2481238 bp Length : 4026 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated DNA sequence : ATGGCATATTCATATTCCGAGAAAAAGCGTATCCGTAAGAGCTTTGGCAAACGCCCACAAGTTCTGAACGTACCTTATCT ATTAACAATTCAGCTTGATTCTTTTGAAAAATTTATCGAAAAAGATCCTGAAGGGCAGCAAGGTTTAGAAGCGGCATTCC GTTCTGTTTTCCCGATTGTGAGCAACAATGGTGCAACAGAATTACAATACGTTTCTTACGAATTAGGCGAGCCGGTGTTT GACGTGCGTGAGTGCCAAATTCGTGGTACAACCTACGCTGCACCATTACGCGTGAAATTGCGTTTAGTCTCTTACGATCG TGAAGCCGCAGCCGGTACGGTAAAAGACATTAAAGAGCAAAACGTGTATATGGGCGAAATCCCATTAATGACCGATAACG GTACTTTCGTGATTAACGGCACCGAGCGTGTTATCGTTTCTCAATTACACCGTAGCCCAGGTGTGTTCTTCGATTCTGAC AAAGGTAAAACCCACTCTTCGGGTAAAGTGCTTTATAACGCACGCATTATCCCTTACCGTGGTTCTTGGTTAGATTTCGA GTTTGATCCGAAAGATAACTTATTTGCCCGTATCGACCGCCGTCGTAAATTGCCGGCAACCATTATTCTACGTGCATTAG GCTACACCACCGAAGAAATCTTAAATTTATTCTTCGAGAAAATTAAATTTGAAATTGCCGATAATAAATTATTGATGACG TTAGTGCCTGAGCGTTTAAGAGGCGAGACTGCATCATTTGATATTGCAGCAAACGGCAAAGTATATGTTGAAATGGGTCG CCGTATTACCGCTCGTCATATCCGTGCGTTAGAAAAAGACAATGTGACCCAAATTGAAGTGCCGGTGGAATATATTGTCG GCAAAGTAGCGGCTCAAGATTACGTTGATTTATCTTCAGGTGAAGTGATTTGCCCGGCGAATATGGAAATCTCGATGGAG ATGTTGGCGAATTTATCACAAGCCGGTTACAACCAGATCGAAGTATTATTTACCAACGATTTAGACCACGGTCCATATAT TTCTGAAACCTTACGTGTTGATCCAACTTACGACCGTTTAAGTGCGTTGGTTGAAATCTATCGTATGATGCGTCCGGGCG AACCACCAACGAAAGAAGCGGCAGAAGCATTATTCGATAATATGTTCTTCTCGGCAGAGCGTTATGATTTATCGGCAGTA GGTCGTATGAAATTCAATCGCTCGTTAGAAATTCCGGAAGGCGTAGGCAGCGGTATTTTAAGCAACGATGACATCATCGG TGTGATGAAAAAATTAATCGAAATCCGTAACGGTCGTGGTGAAGTGGATGATATCGACCACTTAGGTAACCGTCGTATCC GCAGCGTTGGTGAAATGGCAGAAAACCAATTCCGCATTGGTTTGGTGCGTGTAGAACGTGCGGTGCGTGAGCGTTTATCT TTAGGCGATTTAGATGGTGTAACACCACAAGATTTAATCAACGCTAAACCGATTTCAGCAGCAGTGAAAGAGTTCTTTGG TTCATCACAACTTTCGCAATTTATGGACCAAAACAACCCGCTTTCAGAGGTAACACATAAACGCCGTATCTCGGCATTAG GCCCGGGTGGTTTAACCCGTGAGCGTGCCGGCTTTGAAGTGCGTGACGTACACCCGACTCACTATGGTCGTTTATGTCCA ATCGAAACTCCTGAAGGCCCGAATATCGGTTTGATCAACTCACTATCGGTGTATGCTCGTACTAATAACTACGGTTTCTT AGAGACTCCATTCCGTAAAGTGGTGAATGGTCAAGTAACCGAAGAGATCGAGTATTTATCTGCGATTGAAGAAAGCAACA ATATCATTGCACAGGCGAACTCAAACTTAGATGAGAACTTCCGTTTTACCGATACTTATGTAACTTGCCGTCAGCAAGGC GAATCGGGCTTATTCAAACCGGAAGAAGTTCAATATATGGACATCTCAACCCAACAAGTGGTTTCTGTGGCTGCGGCGTT AATTCCGTTCCTTGAGCACGACGATGCGAACCGTGCGTTAATGGGTGCGAACATGCAACGTCAGGCAGTTCCAACCTTGC GTGCGGACAAACCATTAGTCGGTACCGGTATGGAAAAACCAATTGCTCTTGACTCAGGTGTAGCGATTGTCGCAAAACGT GGTGGTACGGTGCAGTATGTTGATGCGTCACGCATTGTAGTGAAAGTAAATGAAGATGAAACCATTCCGGGCGAAGCGGG TATCGATATTTATAACTTAATCAAATACACCCGTTCAAACCAAAACACCTGTATCAACCAAGTACCTTGTGTGAACTTGG GTGAGCCGGTTGCTCGTGGTGAAATCTTAGCGGACGGTCCTTCAACAGACTTAGGTGAATTGGCATTAGGTCAAAATATC CGTGTGGCATTTATGCCTTGGAACGGTTATAACTTCGAAGACTCAATGTTAGTTTCTGAGCGTGTGGTACAAGAAGATCG CTTTACCACTATCCACATTCAAGAATTATCTTGTGTGGCGCGTGATACCAAATTAGGTGCAGAAGAGATCACCGCTGATA TTCCAAACGTGGGTGAATCTGCATTAAGCAAATTAGATGAATCAGGTATCGTTTACATCGGTGCAGAAGTGAAAGGTGGC GACATCTTAGTAGGTAAAGTAACTCCTAAAGGTGAAACCCAATTAACACCGGAAGAAAAACTATTGCGTGCGATCTTCGG TGAAAAAGCCTCTGATGTGAAAGATTCATCATTGCGTGTTCCAAACGGTACTTCAGGTACGGTTATCGATGTTCAAGTAT TTACCCGTGATGGCGTAGAGAAAGATAAACGTGCGAAAGAAATCGAAGAGATGCAACTGTGTGAAGCGAAGAAAGACTTA GCGGAAGAGTTGGAAATCTTAGAAGCCGGTTTATTTACTCGTGTTCGCAACCTATTAATTGAAGGCGGCGTAAAAGAATC TGCATTAGATGGCGTTGCTCGTGAAAAATGGTTAGAACAAACCCTTGAAGACGAAGCGAAGCAAAATCAGTTAGAACAGT TAGCGGAACAGCACGAAGAGTTACGCAAAGAATTTGAACGTAAACTTGAGATCAAACGCAACAAAATTATCCAAGGCGAC GATTTAGCACCGGGTGTGTTAAAAGTAGTGAAAGTTTACCTTGCGGTGAAACGCCAAATCCAGCCGGGTGATAAGATGGC GGGTCGTCACGGTAACAAAGGGGTTATCTCGAAAATCAACCCTGTGGAAGATATGCCATACGATGAAAACGGTCAGCCGG TTGAAATCGTATTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCTTAGAAACCCACTTAGGCTTAGCG GCTCATGGTATCGGTGATCAGATTGATAAGATGATCAAACAGCAACAAGAAGTGGCTAAATTACGTGAATATATGCAAAA AGCCTACGATTTAGGTCACGGCTCACAAGTCGTTGATTTAAGCACTTTCTCTGATGAAGAAGTGATGCGTTTAGCGCAAA ACTTACGCAAAGGCTTACCGCTTGCTACTCCGGTATTCGATGGTGCACACGAAAGCGAAATCAAAGGCTTATTAGAGTTA GGCGGCTTACCGACTTCAGGTCAGATCACACTTTATGATGGTCGTACCGGTGAGAAATTTGAGCGTCCGGTAACCGTTGG TTATATGTATATGCTCAAATTGAACCACTTGGTTGATGATAAAATGCACGCTCGTTCAACCGGTTCTTATAGCCTTGTTA CTCAACAACCATTGGGTGGTAAAGCTCAATTCGGTGGTCAGCGTTTCGGTGAGATGGAGGTTTGGGCATTAGAAGCATAC GGTGCGGCTTATACTCTTCAAGAAATGCTTACGGTGAAATCGGACGATGTGAACGGTCGTACGAAGATGTATAAAAACAT TGTAGATGGTACACATTATATGGAGCCGGGTATCCCTGAATCCTTTAACGTAATTACCAAAGAGATCCGTGCATTAGCAA TTGATATGGAGCTGGACGAAGCGTAA Protein sequence : MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPEGQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVF DVRECQIRGTTYAAPLRVKLRLVSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKIKFEIADNKLLMT LVPERLRGETASFDIAANGKVYVEMGRRITARHIRALEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISME MLANLSQAGYNQIEVLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSAERYDLSAV GRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCP IETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLDENFRFTDTYVTCRQQG ESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKR GGTVQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQNI RVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDL AEELEILEAGLFTRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGD DLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLA AHGIGDQIDKMIKQQQEVAKLREYMQKAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLEL GGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 72 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 72 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 85 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 85 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 85 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 85 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 85 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 84 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 72 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 72 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 72 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 72 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 72 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 72 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 70 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 62 |
| rpoB | YP_008340007.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
