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Name : BN865_15970c (BN865_15970c) Accession : YP_008474219.1 Strain : Campylobacter coli 76339 Genome accession: NC_022132 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta subunit Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 1539819 - 1543946 bp Length : 4128 bp Strand : - Note : - DNA sequence : ATGTTAGACAATAAATTAAGAAATCGTTTAAGAGTAGATTTCTCCAATATTTCAAAGCAAATAGAAATTCCAAATCTTCT CCAACTTCAAAAAGCAAGTTTTGATTATTTTTTAAATCTTGAGAATGGCGAAAGTGGAATCGAAAAAGTTTTTAAATCAA TCTTTCCTATCCATGATCCACAAAATAGGTTAAGTCTTGAGTATGTTAGCAGCGAAATTGGAAAACCAAAATACACGATT CGTGAGTGTATGGAAAGAGGTTTGACTTACTCTGTAAATTTAAAAATGAAAATCCGTCTTACTCTACATGAAAAAGATGA GAAAACAGGTGAAAAAGTTGGTATAAAAGATATCAAAGAGCAAGAAATTTATATCAGAGAAATTCCATTGATGACAGATA GAGTTTCTTTTATTATCAATGGGGTTGAAAGAGTTGTGGTTAACCAGCTTCATAGAAGCCCAGGCGTAATCTTTAAAGAA GAAGAAAGCTCAACTGTCGTTAACAAGCTTGTATACACTGCACAAATTATTCCTGATCGCGGTTCTTGGCTTTATTTTGA ATACGATGCTAAAGATGTATTATATGTAAGGATTAATAAAAGAAGAAAAGTGCCAGTAACAATGCTTTTTAGAGCTTTGG GATATAAAAAACAAGATATTATTAAATTATTTTATCCTATTCAGACAATTCATGTAAAAAAAGATAAATTCTTAACAGAA TTTAATCCAAATGATTTTATGGATAGAATAGAATATGATATCAAAGATGAAAAAGGAAAAGTTGTTCATCAGGCTGGAAA AAGACTGACTAAGAAAAAAGCTGAACAGCTTATTAAAGATGGTTTAAAATGGATAGAATATCCAGTAGAAGTTTTATTAA ACCGTTACCTAGCTAATCCTATTATTGATAAAGAAAGTGGTGAAGTTTTATTTGACTCTCTTACCTTACTTGATGAAAGT AAACTTGTTAAAATTAAAGAACAAAAAAGCTTTGAGATAGCTAACGATTTGGCAAATGGAGTGGACGCAGCTATTATCAA CTCGTTTGCACAAGATAATGAAACTCTAAAATTATTAAAACAAAGTGAAAATATCGACGATGAAAATGATTTAGCAGCTA TTAGAATTTATAAAGTAATGCGTCCAGGCGAACCTGTTGTAAAAGATGCAGCTAAAGCTTTTGTTAACGATTTATTTTTT AATCCTGAAAGATACGATCTTACCAAAGTAGGTCGTATGAAAATGAATCATAAACTAGGACTTGAAGTTCCAGAATATGT AACAGTTCTAACTAATGAAGATATTATCAAAACTGCGAAATATTTGATTAAAGTAAAAAATGGTAAAGGTCATATCGATG ATAGAGACCATTTAGGAAATCGTCGTATTCGATCTATCGGGGAGCTTTTAGCAAATGAACTTCATTTAGGTCTTGCCAAA ATGCAAAAGGCTATAAGAGATAAATTTACTTCTCTAAATGCAGATATAGACAAAGTAATGCCTTATGATTTGATCAATCC TAAAATGATCACAACAACCATCATCGAATTCTTTACAGGTGGACAACTTTCACAATTTATGGATCAAACCAATCCTCTAA GTGAAGTTACACATAAACGCCGTCTATCAGCATTAGGAGAGGGTGGTCTTGTTAAGGAAAGAGCGGGTTTTGAAGTGCGT GATGTTCACGCAACGCATTATGGTAGGATTTGTCCTGTTGAAACTCCAGAAGGACAAAATATCGGTTTGATCAATACCTT ATCTACTTATGCTAAAGTAAATGAGCTTGGATTTGTTGAAGCTCCTTATAGAAAAGTAGAAAATGGAAGAGTAACAGATC AGGTTGTGTATTTAACGGCTACTCAAGAAGAAGGATTATTCATCGCTGCAGCTTCTACAAAAGTAGATGCTAAAGGTAAT ATAGTGGAAGAATTTGTTGAAGCAAGACAAGATGGAGAAACTATACTTGCAAGACGCGAAGAAGTGCAGCTTATAGATCT TTGTTCAGGTATGGTTGTGGGTGTTGCTGCTTCTTTGATTCCATTTTTAGAGCATGATGATGCAAATAGGGCATTAATGG GTTCAAACATGCAACGTCAAGCTGTTCCGCTTATAACTTCTTCAGCACCTATTGTTGGGACAGGTATGGAAAATATCATT GCTCGTGATGCTTGGGAAGCTATAAAAGCTAAAAGAGGCGGAGTAGTTGAAAAAGTAGATAACAAAAGCATATTTATCCT TGGTGAAGATGAAAAAGGTCCATTTATAGATCATTATATTATGGAAAAAAATCTTCGCACAAACCAAAATACAAATTTTA TGCAACATCCTATTGTTAAAAAGGGAGATGTGGTTAAAGCAGGGCAAATTATAGCTGATGGTCCTTCTATGGATCAAGGT GAACTTGCTATCGGAAAAAATGCTTTGATTGCTTTTATGCCTTGGAATGGATATAACTACGAAGATGCTATAGTAGTAAG CGAAAGAATTATACGCGAAGATACTTTTACTAGTGTTCATATTTATGAAAAAGAAATAGAAGCTAGAGAATTAAAAGATG GTATAGAAGAGATTACTAAGGATATACCAAATGTTAAAGAAGAAGATGTTGCACATTTGGATGAAAGCGGTATAGCAAAA ATTGGTACCCATATAAAACCAGGTATGATTTTAGTAGGTAAGGTTTCTCCAAAAGGTGAAGTTAAGCCAACGCCTGAGGA AAGACTTTTAAGGGCAATTTTTGGTGAAAAAGCTGGCCATGTGGTGAATAAATCTCTTTACGCTACTGCCTCTTTAGAAG GTGTAGTTGTTGATGTAAAAATTTTCACCAAAAAAGGATATGAAAAAGACGATAGAGCTTTAAAATCATATGATAAAGAA AAAATGTCCTTAGAAAAAGAACATCATGATAGACTTTTAATGATGGATAGAGAAGAGATGTTGCGCGTTTGTGCGTTGCT TTCTAAATCTGCTTTAATGAGTGATCAAAAAATAGGTGATAAAAACTATACAAAAGGACAAAAAGCAAGTCTAGAGGATT TGGAAAAAATCAATCGTTTTACTTTGACTACTTTAATTAAAGCTTATTCTAAAGAAGTTCAAAAAGAATACGAAGAATTA AAAAATCATTTCCAAAATGAGAAGAAAAAGCTTAAAGCTGAGCACGATGAGAAGCTTGAAATTTTAGAAAAAGATGATAT TTTACCAAGTGGAGTAATTAAGCTTGTTAAGGTATATATCGCAACAAAACGCAAGCTTAAAGTGGGCGATAAAATGGCAG GACGTCACGGAAACAAAGGTATAGTTTCTACTATAGTACCTGAAGTGGATATGCCTTATTTACCAAATGGAAAAAGTGTA GATATCGCACTTAACCCACTTGGGGTTCCAAGTCGTATGAATATAGGACAAATTTTAGAAAGCCATTTAGGTCTTGTAGG ACTTAGACTGGGTGATCAAATTCAAGAAATTTTTGACAGAAAACAAAAAGATTTCATTAAAGAATTAAGAGCAAAAATGC TTGAAATATGTTCTATTCCAAGACTTGCAAATGAAAAAGAATTTATTAAAAATTTAAGCGATGAAGAGCTTTTAAATTAT GCGAGAGATTGGAGCAAGGGTGTTAAATTTGCAACTCCTGTTTTCGAAGGGGTAAATATAGAAGAGTTTGCAAAACTTTT TGAAATAGCAAAGATTGATATGGACGGTAAAACAGAGCTTTACGACGGTCGTACCGGAGAAAAAATCGCTGAGAGAGTTC ATGTGGGATGTATGTATATGTTAAAACTTCACCATTTAGTTGATGAAAAAGTTCATGCTAGAAGTACAGGGCCTTATAGT TTGGTTACTCAGCAGCCTGTGGGTGGTAAAGCACTCTTTGGTGGACAAAGATTTGGTGAAATGGAGGTTTGGGCACTCGA AGCTTATGGGGCAGCTCATACTTTAAGAGAGATGCTTACTATAAAATCTGATGATGTTGAAGGTAGATTCAGTGCCTATA AAGCACTTACTAAAGGAGAAAATGTCCCAGCGACAGGAATTCCGGAGACATTTTTTGTATTGACTAACGAACTTAAATCT CTAGCTTTAGATGTTGAGATTTTTGATAAGGATGAAGACAATGAGTAA Protein sequence : MLDNKLRNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLENGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTI RECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKE EESSTVVNKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE FNPNDFMDRIEYDIKDEKGKVVHQAGKRLTKKKAEQLIKDGLKWIEYPVEVLLNRYLANPIIDKESGEVLFDSLTLLDES KLVKIKEQKSFEIANDLANGVDAAIINSFAQDNETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFF NPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAK MQKAIRDKFTSLNADIDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVR DVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVENGRVTDQVVYLTATQEEGLFIAAASTKVDAKGN IVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLITSSAPIVGTGMENII ARDAWEAIKAKRGGVVEKVDNKSIFILGEDEKGPFIDHYIMEKNLRTNQNTNFMQHPIVKKGDVVKAGQIIADGPSMDQG ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAK IGTHIKPGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRALKSYDKE KMSLEKEHHDRLLMMDREEMLRVCALLSKSALMSDQKIGDKNYTKGQKASLEDLEKINRFTLTTLIKAYSKEVQKEYEEL KNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSV DIALNPLGVPSRMNIGQILESHLGLVGLRLGDQIQEIFDRKQKDFIKELRAKMLEICSIPRLANEKEFIKNLSDEELLNY ARDWSKGVKFATPVFEGVNIEEFAKLFEIAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEKVHARSTGPYS LVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKS LALDVEIFDKDEDNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 48 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 49 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 46 |
| BN865_15970c | YP_008474219.1 | DNA-directed RNA polymerase beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
