Gene Information

Name : ssaQ (SPUCDC_1234)
Accession : YP_008480905.1
Strain : Salmonella enterica CDC1983-67
Genome accession: NC_022221
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1263715 - 1264683 bp
Length : 969 bp
Strand : +
Note : -

DNA sequence : 
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGATGGAGATGCTTCCAACGCAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAAGAATGCTGGCAGCGCTGGTGTGAAGGGTTAATTGGCACCGCTAATCGATCGGCTATCGATCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAACCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGCGCGACAACAGATTTATCCTGCCCCTCCTGTAGCG
CTCCCTGCATATTTAGGCTGGCGCCAGCTTACGTTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGGATCTACGCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGATGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGTCCAATGTCAAAGAGTGAC
GGAACATCTTCAGTAGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATCGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGTGGATGTTTTGCGCCAGAGGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGCAATGAATTTATGGTGCGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Protein sequence : 
MLRIANEERPWMEMLPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEECWQRWCEGLIGTANRSAIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAARQQIYPAPPVA
LPAYLGWRQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 9e-139 98
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 6e-139 97
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 4e-94 97
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 4e-138 97
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 4e-138 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaQ YP_008480905.1 putative type III secretion protein VFG0518 Protein 3e-139 97